Cargando…

Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota

The structural complexity of lignocellulosic biomass hinders the extraction of cellulose, and it has remained a challenge for decades in the biofuel production process. However, wood-feeding organisms like termite have developed an efficient natural lignocellulolytic system with the help of speciali...

Descripción completa

Detalles Bibliográficos
Autores principales: Kundu, Pritam, Manna, Bharat, Majumder, Subham, Ghosh, Amit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6841923/
https://www.ncbi.nlm.nih.gov/pubmed/31705042
http://dx.doi.org/10.1038/s41598-019-52843-w
_version_ 1783467961527304192
author Kundu, Pritam
Manna, Bharat
Majumder, Subham
Ghosh, Amit
author_facet Kundu, Pritam
Manna, Bharat
Majumder, Subham
Ghosh, Amit
author_sort Kundu, Pritam
collection PubMed
description The structural complexity of lignocellulosic biomass hinders the extraction of cellulose, and it has remained a challenge for decades in the biofuel production process. However, wood-feeding organisms like termite have developed an efficient natural lignocellulolytic system with the help of specialized gut microbial symbionts. Despite having an enormous amount of high-throughput metagenomic data, specific contributions of each individual microbe to achieve this lignocellulolytic functionality remains unclear. The metabolic cross-communication and interdependence that drives the community structure inside the gut microbiota are yet to be explored. We have contrived a species-wide metabolic interaction network of the termite gut-microbiome to have a system-level understanding of metabolic communication. Metagenomic data of Nasutitermes corniger have been analyzed to identify microbial communities in different gut segments. A comprehensive metabolic cross-feeding network of 205 microbes and 265 metabolites was developed using published experimental data. Reconstruction of inter-species influence network elucidated the role of 37 influential microbes to maintain a stable and functional microbiota. Furthermore, in order to understand the natural lignocellulose digestion inside N. corniger gut, the metabolic functionality of each influencer was assessed, which further elucidated 15 crucial hemicellulolytic microbes and their corresponding enzyme machinery.
format Online
Article
Text
id pubmed-6841923
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-68419232019-11-14 Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota Kundu, Pritam Manna, Bharat Majumder, Subham Ghosh, Amit Sci Rep Article The structural complexity of lignocellulosic biomass hinders the extraction of cellulose, and it has remained a challenge for decades in the biofuel production process. However, wood-feeding organisms like termite have developed an efficient natural lignocellulolytic system with the help of specialized gut microbial symbionts. Despite having an enormous amount of high-throughput metagenomic data, specific contributions of each individual microbe to achieve this lignocellulolytic functionality remains unclear. The metabolic cross-communication and interdependence that drives the community structure inside the gut microbiota are yet to be explored. We have contrived a species-wide metabolic interaction network of the termite gut-microbiome to have a system-level understanding of metabolic communication. Metagenomic data of Nasutitermes corniger have been analyzed to identify microbial communities in different gut segments. A comprehensive metabolic cross-feeding network of 205 microbes and 265 metabolites was developed using published experimental data. Reconstruction of inter-species influence network elucidated the role of 37 influential microbes to maintain a stable and functional microbiota. Furthermore, in order to understand the natural lignocellulose digestion inside N. corniger gut, the metabolic functionality of each influencer was assessed, which further elucidated 15 crucial hemicellulolytic microbes and their corresponding enzyme machinery. Nature Publishing Group UK 2019-11-08 /pmc/articles/PMC6841923/ /pubmed/31705042 http://dx.doi.org/10.1038/s41598-019-52843-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kundu, Pritam
Manna, Bharat
Majumder, Subham
Ghosh, Amit
Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title_full Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title_fullStr Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title_full_unstemmed Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title_short Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
title_sort species-wide metabolic interaction network for understanding natural lignocellulose digestion in termite gut microbiota
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6841923/
https://www.ncbi.nlm.nih.gov/pubmed/31705042
http://dx.doi.org/10.1038/s41598-019-52843-w
work_keys_str_mv AT kundupritam specieswidemetabolicinteractionnetworkforunderstandingnaturallignocellulosedigestionintermitegutmicrobiota
AT mannabharat specieswidemetabolicinteractionnetworkforunderstandingnaturallignocellulosedigestionintermitegutmicrobiota
AT majumdersubham specieswidemetabolicinteractionnetworkforunderstandingnaturallignocellulosedigestionintermitegutmicrobiota
AT ghoshamit specieswidemetabolicinteractionnetworkforunderstandingnaturallignocellulosedigestionintermitegutmicrobiota