Cargando…

Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples

OBJECTIVES: Hepatic carcinoma with metastasis remains incurable, and clinical diagnostic methods lacked adequate sensitivity and specificity. Therefore, seeking effectively diagnostic biomarkers is still essential for it. RHOC was reported to be linked to metastasis of hepatic carcinoma. However, al...

Descripción completa

Detalles Bibliográficos
Autores principales: Shen, Yanting, Bu, Lu, Li, Rui, Chen, Zhenzhu, Tian, Fei, Ge, Qinyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842290/
https://www.ncbi.nlm.nih.gov/pubmed/31806997
http://dx.doi.org/10.2147/OTT.S222235
_version_ 1783468024785797120
author Shen, Yanting
Bu, Lu
Li, Rui
Chen, Zhenzhu
Tian, Fei
Ge, Qinyu
author_facet Shen, Yanting
Bu, Lu
Li, Rui
Chen, Zhenzhu
Tian, Fei
Ge, Qinyu
author_sort Shen, Yanting
collection PubMed
description OBJECTIVES: Hepatic carcinoma with metastasis remains incurable, and clinical diagnostic methods lacked adequate sensitivity and specificity. Therefore, seeking effectively diagnostic biomarkers is still essential for it. RHOC was reported to be linked to metastasis of hepatic carcinoma. However, almost all of the studies used tissues as detection samples, which was not ideal for clinical course minoring. Therefore, here, it was aimed to use PBMC samples that were not only easily accessible but also minimally invasive to determine the expression and biological interaction network of RHOC for hepatic carcinoma with metastasis. METHODS: PBMC samples were isolated. Then, RNA-seq was performed to identify the DEGs between hepatic carcinoma with metastasis and hepatic carcinoma with solitary tumor. Subsequently, q-RT-PCR was used to verify the expression level of RHOC. Finally, bioinformatic analysis was used to present the biological interaction network of RHOC for hepatic carcinoma with metastasis in PBMC samples. RESULTS: The results of both RNA-seq and q-RT-PCR showed that the expression level of RHOC was significantly higher in the PBMC samples of hepatic carcinoma with metastasis than in those of hepatic carcinoma with solitary tumor. By using variety of bioinformatic analysis platforms, in PBMCs, 18 co-expression genes with RHOC were identified and their interaction network showed that MYL9 and RHOC had the highest edge evidence, and were involved in some cell migration-related pathways. CONCLUSION: Our results indicated that RHOC in PBMCs could be potentially minimally invasive indicators for the diagnosis and clinical course supervision of hepatic carcinoma with metastasis, and its biological interaction network determined based on bioinformatic methods would lay a foundation for further study of the role of RHOC in tumor invasion and metastasis.
format Online
Article
Text
id pubmed-6842290
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Dove
record_format MEDLINE/PubMed
spelling pubmed-68422902019-12-05 Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples Shen, Yanting Bu, Lu Li, Rui Chen, Zhenzhu Tian, Fei Ge, Qinyu Onco Targets Ther Original Research OBJECTIVES: Hepatic carcinoma with metastasis remains incurable, and clinical diagnostic methods lacked adequate sensitivity and specificity. Therefore, seeking effectively diagnostic biomarkers is still essential for it. RHOC was reported to be linked to metastasis of hepatic carcinoma. However, almost all of the studies used tissues as detection samples, which was not ideal for clinical course minoring. Therefore, here, it was aimed to use PBMC samples that were not only easily accessible but also minimally invasive to determine the expression and biological interaction network of RHOC for hepatic carcinoma with metastasis. METHODS: PBMC samples were isolated. Then, RNA-seq was performed to identify the DEGs between hepatic carcinoma with metastasis and hepatic carcinoma with solitary tumor. Subsequently, q-RT-PCR was used to verify the expression level of RHOC. Finally, bioinformatic analysis was used to present the biological interaction network of RHOC for hepatic carcinoma with metastasis in PBMC samples. RESULTS: The results of both RNA-seq and q-RT-PCR showed that the expression level of RHOC was significantly higher in the PBMC samples of hepatic carcinoma with metastasis than in those of hepatic carcinoma with solitary tumor. By using variety of bioinformatic analysis platforms, in PBMCs, 18 co-expression genes with RHOC were identified and their interaction network showed that MYL9 and RHOC had the highest edge evidence, and were involved in some cell migration-related pathways. CONCLUSION: Our results indicated that RHOC in PBMCs could be potentially minimally invasive indicators for the diagnosis and clinical course supervision of hepatic carcinoma with metastasis, and its biological interaction network determined based on bioinformatic methods would lay a foundation for further study of the role of RHOC in tumor invasion and metastasis. Dove 2019-11-05 /pmc/articles/PMC6842290/ /pubmed/31806997 http://dx.doi.org/10.2147/OTT.S222235 Text en © 2019 Shen et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Shen, Yanting
Bu, Lu
Li, Rui
Chen, Zhenzhu
Tian, Fei
Ge, Qinyu
Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title_full Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title_fullStr Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title_full_unstemmed Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title_short Expression And Biological Interaction Network Of RHOC For Hepatic Carcinoma With Metastasis In PBMC Samples
title_sort expression and biological interaction network of rhoc for hepatic carcinoma with metastasis in pbmc samples
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842290/
https://www.ncbi.nlm.nih.gov/pubmed/31806997
http://dx.doi.org/10.2147/OTT.S222235
work_keys_str_mv AT shenyanting expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples
AT bulu expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples
AT lirui expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples
AT chenzhenzhu expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples
AT tianfei expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples
AT geqinyu expressionandbiologicalinteractionnetworkofrhocforhepaticcarcinomawithmetastasisinpbmcsamples