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Data-driven discovery of coordinates and governing equations
The discovery of governing equations from scientific data has the potential to transform data-rich fields that lack well-characterized quantitative descriptions. Advances in sparse regression are currently enabling the tractable identification of both the structure and parameters of a nonlinear dyna...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842598/ https://www.ncbi.nlm.nih.gov/pubmed/31636218 http://dx.doi.org/10.1073/pnas.1906995116 |
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author | Champion, Kathleen Lusch, Bethany Kutz, J. Nathan Brunton, Steven L. |
author_facet | Champion, Kathleen Lusch, Bethany Kutz, J. Nathan Brunton, Steven L. |
author_sort | Champion, Kathleen |
collection | PubMed |
description | The discovery of governing equations from scientific data has the potential to transform data-rich fields that lack well-characterized quantitative descriptions. Advances in sparse regression are currently enabling the tractable identification of both the structure and parameters of a nonlinear dynamical system from data. The resulting models have the fewest terms necessary to describe the dynamics, balancing model complexity with descriptive ability, and thus promoting interpretability and generalizability. This provides an algorithmic approach to Occam’s razor for model discovery. However, this approach fundamentally relies on an effective coordinate system in which the dynamics have a simple representation. In this work, we design a custom deep autoencoder network to discover a coordinate transformation into a reduced space where the dynamics may be sparsely represented. Thus, we simultaneously learn the governing equations and the associated coordinate system. We demonstrate this approach on several example high-dimensional systems with low-dimensional behavior. The resulting modeling framework combines the strengths of deep neural networks for flexible representation and sparse identification of nonlinear dynamics (SINDy) for parsimonious models. This method places the discovery of coordinates and models on an equal footing. |
format | Online Article Text |
id | pubmed-6842598 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-68425982019-11-15 Data-driven discovery of coordinates and governing equations Champion, Kathleen Lusch, Bethany Kutz, J. Nathan Brunton, Steven L. Proc Natl Acad Sci U S A Physical Sciences The discovery of governing equations from scientific data has the potential to transform data-rich fields that lack well-characterized quantitative descriptions. Advances in sparse regression are currently enabling the tractable identification of both the structure and parameters of a nonlinear dynamical system from data. The resulting models have the fewest terms necessary to describe the dynamics, balancing model complexity with descriptive ability, and thus promoting interpretability and generalizability. This provides an algorithmic approach to Occam’s razor for model discovery. However, this approach fundamentally relies on an effective coordinate system in which the dynamics have a simple representation. In this work, we design a custom deep autoencoder network to discover a coordinate transformation into a reduced space where the dynamics may be sparsely represented. Thus, we simultaneously learn the governing equations and the associated coordinate system. We demonstrate this approach on several example high-dimensional systems with low-dimensional behavior. The resulting modeling framework combines the strengths of deep neural networks for flexible representation and sparse identification of nonlinear dynamics (SINDy) for parsimonious models. This method places the discovery of coordinates and models on an equal footing. National Academy of Sciences 2019-11-05 2019-10-21 /pmc/articles/PMC6842598/ /pubmed/31636218 http://dx.doi.org/10.1073/pnas.1906995116 Text en Copyright © 2019 the Author(s). Published by PNAS. http://creativecommons.org/licenses/by/4.0/ https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (http://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Physical Sciences Champion, Kathleen Lusch, Bethany Kutz, J. Nathan Brunton, Steven L. Data-driven discovery of coordinates and governing equations |
title | Data-driven discovery of coordinates and governing equations |
title_full | Data-driven discovery of coordinates and governing equations |
title_fullStr | Data-driven discovery of coordinates and governing equations |
title_full_unstemmed | Data-driven discovery of coordinates and governing equations |
title_short | Data-driven discovery of coordinates and governing equations |
title_sort | data-driven discovery of coordinates and governing equations |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842598/ https://www.ncbi.nlm.nih.gov/pubmed/31636218 http://dx.doi.org/10.1073/pnas.1906995116 |
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