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Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy

The flexibility of a molecule has important consequences on its function and application. Vibrational Circular Dichroism (VCD) is intrinsically an excellent experimental technique to get a hold on this flexibility as it is highly sensitive to key conformational details and able to distinguish rapidl...

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Autores principales: Koenis, Mark A. J., Xia, Yiyin, Domingos, Sérgio R., Visscher, Lucas, Buma, Wybren Jan, Nicu, Valentin P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6844231/
https://www.ncbi.nlm.nih.gov/pubmed/31803406
http://dx.doi.org/10.1039/c9sc02866h
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author Koenis, Mark A. J.
Xia, Yiyin
Domingos, Sérgio R.
Visscher, Lucas
Buma, Wybren Jan
Nicu, Valentin P.
author_facet Koenis, Mark A. J.
Xia, Yiyin
Domingos, Sérgio R.
Visscher, Lucas
Buma, Wybren Jan
Nicu, Valentin P.
author_sort Koenis, Mark A. J.
collection PubMed
description The flexibility of a molecule has important consequences on its function and application. Vibrational Circular Dichroism (VCD) is intrinsically an excellent experimental technique to get a hold on this flexibility as it is highly sensitive to key conformational details and able to distinguish rapidly interconverting conformers. One of the major challenges in analyzing the spectra by comparison to theoretical predictions is the uncertainty in the computed energies of the multitude of conformations. This uncertainty also affects the reliability of the stereochemical assignment it is normally used for. We present here a novel approach that explicitly takes the energy uncertainties into account in a genetic algorithm based method that fits calculated to the experimental spectra. We show that this approach leads to significant improvements over previously used methodologies. Importantly, statistical validation studies provide quantitative measures for the reliability of relevant parameters used such as the energy uncertainty and the extent to which conformational heterogeneity can be determined. Similarly, quantitative measures can be obtained for the possibility that the flexibility that is introduced in the fit might lead to an incorrect assignment of the stereochemistry. These results break new ground for different techniques based on VCD to elucidate conformational flexibility.
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spelling pubmed-68442312019-12-04 Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy Koenis, Mark A. J. Xia, Yiyin Domingos, Sérgio R. Visscher, Lucas Buma, Wybren Jan Nicu, Valentin P. Chem Sci Chemistry The flexibility of a molecule has important consequences on its function and application. Vibrational Circular Dichroism (VCD) is intrinsically an excellent experimental technique to get a hold on this flexibility as it is highly sensitive to key conformational details and able to distinguish rapidly interconverting conformers. One of the major challenges in analyzing the spectra by comparison to theoretical predictions is the uncertainty in the computed energies of the multitude of conformations. This uncertainty also affects the reliability of the stereochemical assignment it is normally used for. We present here a novel approach that explicitly takes the energy uncertainties into account in a genetic algorithm based method that fits calculated to the experimental spectra. We show that this approach leads to significant improvements over previously used methodologies. Importantly, statistical validation studies provide quantitative measures for the reliability of relevant parameters used such as the energy uncertainty and the extent to which conformational heterogeneity can be determined. Similarly, quantitative measures can be obtained for the possibility that the flexibility that is introduced in the fit might lead to an incorrect assignment of the stereochemistry. These results break new ground for different techniques based on VCD to elucidate conformational flexibility. Royal Society of Chemistry 2019-07-09 /pmc/articles/PMC6844231/ /pubmed/31803406 http://dx.doi.org/10.1039/c9sc02866h Text en This journal is © The Royal Society of Chemistry 2019 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0)
spellingShingle Chemistry
Koenis, Mark A. J.
Xia, Yiyin
Domingos, Sérgio R.
Visscher, Lucas
Buma, Wybren Jan
Nicu, Valentin P.
Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title_full Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title_fullStr Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title_full_unstemmed Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title_short Taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
title_sort taming conformational heterogeneity in and with vibrational circular dichroism spectroscopy
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6844231/
https://www.ncbi.nlm.nih.gov/pubmed/31803406
http://dx.doi.org/10.1039/c9sc02866h
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