Cargando…

Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria

In all cells, initiation of translation is tuned by intrinsic features of the mRNA. Here, we analyze translation in Flavobacterium johnsoniae, a representative of the Bacteroidetes. Members of this phylum naturally lack Shine–Dalgarno (SD) sequences in their mRNA, and yet their ribosomes retain the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Baez, William D, Roy, Bappaditya, McNutt, Zakkary A, Shatoff, Elan A, Chen, Shicheng, Bundschuh, Ralf, Fredrick, Kurt
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	NAR Breakthrough Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6847099/ https://www.ncbi.nlm.nih.gov/pubmed/31602466 http://dx.doi.org/10.1093/nar/gkz855

Ejemplares similares

Comparative Analysis of anti-Shine- Dalgarno Function in Flavobacterium johnsoniae and Escherichia coli
por: McNutt, Zakkary A., et al.
Publicado: (2021)

Ribosomes lacking bS21 gain function to regulate protein synthesis in Flavobacterium johnsoniae
por: McNutt, Zakkary A, et al.
Publicado: (2023)

Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome
por: Jha, Vikash, et al.
Publicado: (2020)

Biphasic unbinding of a metalloregulator from DNA for transcription (de)repression in Live Bacteria
por: Jung, Won, et al.
Publicado: (2020)

Maturation of 23S rRNA includes removal of helix H1 in many bacteria
por: Shatoff, Elan A., et al.
Publicado: (2021)

IncC conjugative plasmids and SXT/R391 elements repair double-strand breaks caused by CRISPR–Cas during conjugation
por: Roy, David, et al.
Publicado: (2020)

The nuclear structural protein NuMA is a negative regulator of 53BP1 in DNA double-strand break repair
por: Salvador Moreno, Naike, et al.
Publicado: (2019)

Identification of a multidrug efflux pump in Flavobacterium johnsoniae
por: Clark, Sarah E., et al.
Publicado: (2009)

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
por: Noronha, Alberto, et al.
Publicado: (2019)

Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons
por: Sakai, Yusuke, et al.
Publicado: (2016)

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers
por: Espah Borujeni, Amin, et al.
Publicado: (2016)

The STAR protein QKI-7 recruits PAPD4 to regulate post-transcriptional polyadenylation of target mRNAs
por: Yamagishi, Ryota, et al.
Publicado: (2016)

Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea
por: Ishino, Sonoko, et al.
Publicado: (2016)

Reversible acetylation on Lys501 regulates the activity of RNase II
por: Song, Limin, et al.
Publicado: (2016)

Methylation of histone H3 lysine 9 occurs during translation
por: Rivera, Carlos, et al.
Publicado: (2015)

Structure of a human translation termination complex
por: Matheisl, Sarah, et al.
Publicado: (2015)

Antisense oligonucleotides delivered to the amniotic cavity in utero modulate gene expression in the postnatal mouse
por: Depreux, Frederic F., et al.
Publicado: (2016)

A novel role for poly(C) binding proteins in programmed ribosomal frameshifting
por: Napthine, Sawsan, et al.
Publicado: (2016)

High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy
por: Short, Judith M., et al.
Publicado: (2016)

Mitochondrial DNA exhibits resistance to induced point and deletion mutations
por: Valente, William J., et al.
Publicado: (2016)

3.9 Å structure of the nucleosome core particle determined by phase-plate cryo-EM
por: Chua, Eugene Y.D., et al.
Publicado: (2016)

Division of labor among Mycobacterium smegmatis RNase H enzymes: RNase H1 activity of RnhA or RnhC is essential for growth whereas RnhB and RnhA guard against killing by hydrogen peroxide in stationary phase
por: Gupta, Richa, et al.
Publicado: (2017)

DNA-assisted oligomerization of pore-forming toxin monomers into precisely-controlled protein channels
por: Henning-Knechtel, Anja, et al.
Publicado: (2017)

A single active site in the mariner transposase cleaves DNA strands of opposite polarity
por: Claeys Bouuaert, Corentin, et al.
Publicado: (2017)

The mechanisms of a mammalian splicing enhancer
por: Jobbins, Andrew M, et al.
Publicado: (2018)

Logical engineering of D-arm and T-stem of tRNA that enhances d-amino acid incorporation
por: Katoh, Takayuki, et al.
Publicado: (2017)

Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences
por: Pressman, Abe, et al.
Publicado: (2017)

Subtelomeres constitute a safeguard for gene expression and chromosome homeostasis
por: Tashiro, Sanki, et al.
Publicado: (2017)

Proteomic identification of histone post-translational modifications and proteins enriched at a DNA double-strand break
por: Wang, Pingping, et al.
Publicado: (2017)

Prespacer processing and specific integration in a Type I-A CRISPR system
por: Rollie, Clare, et al.
Publicado: (2018)

Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease
por: Asano, Kana, et al.
Publicado: (2018)

An interplay of miRNA abundance and target site architecture determines miRNA activity and specificity
por: Brancati, Giovanna, et al.
Publicado: (2018)

Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription
por: Belashov, Ivan A, et al.
Publicado: (2018)

Generating genomic platforms to study Candida albicans pathogenesis
por: Legrand, Mélanie, et al.
Publicado: (2018)

Extensive and systematic rewiring of histone post-translational modifications in cancer model systems
por: Noberini, Roberta, et al.
Publicado: (2018)

The arginine methyltransferase CARM1 represses p300•ACT•CREMτ activity and is required for spermiogenesis
por: Bao, Jianqiang, et al.
Publicado: (2018)

Antisense oligonucleotides correct the familial dysautonomia splicing defect in IKBKAP transgenic mice
por: Sinha, Rahul, et al.
Publicado: (2018)

Designer tRNAs for efficient incorporation of non-canonical amino acids by the pyrrolysine system in mammalian cells
por: Serfling, Robert, et al.
Publicado: (2018)

Reconstitution of the CstF complex unveils a regulatory role for CstF-50 in recognition of 3′-end processing signals
por: Yang, Wen, et al.
Publicado: (2018)

3′ end additions by T7 RNA polymerase are RNA self-templated, distributive and diverse in character—RNA-Seq analyses
por: Gholamalipour, Yasaman, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_mnrvi4oar1h8lfgjng3dagm7p6