Cargando…

Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA

Chemical modification of transcripts with 5′ caps occurs in all organisms. Here, we report a systems-level mass spectrometry-based technique, CapQuant, for quantitative analysis of an organism's cap epitranscriptome. The method was piloted with 21 canonical caps—m(7)GpppN, m(7)GpppNm, GpppN, Gp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Jin, Alvin Chew, Bing Liang, Lai, Yong, Dong, Hongping, Xu, Luang, Balamkundu, Seetharamsingh, Cai, Weiling Maggie, Cui, Liang, Liu, Chuan Fa, Fu, Xin-Yuan, Lin, Zhenguo, Shi, Pei-Yong, Lu, Timothy K, Luo, Dahai, Jaffrey, Samie R, Dedon, Peter C
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6847653/ https://www.ncbi.nlm.nih.gov/pubmed/31504804 http://dx.doi.org/10.1093/nar/gkz751

Ejemplares similares

ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA
por: Niu, Kongyan, et al.
Publicado: (2022)

Expanding the epitranscriptome: Dihydrouridine in mRNA
por: Dixit, Sameer, et al.
Publicado: (2022)

mRNA ageing shapes the Cap2 methylome in mammalian mRNA
por: Despic, Vladimir, et al.
Publicado: (2023)

The birth of the Epitranscriptome: deciphering the function of RNA modifications
por: Saletore, Yogesh, et al.
Publicado: (2012)

A cap 0-dependent mRNA capture method to analyze the yeast transcriptome
por: Nowacka, Martyna, et al.
Publicado: (2022)

Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number
por: Pang, Yan Ling Joy, et al.
Publicado: (2014)

Versatile strategy using vaccinia virus-capping enzyme to synthesize functional 5′ cap-modified mRNAs
por: Ohno, Hirohisa, et al.
Publicado: (2023)

Attomole quantification and global profile of RNA modifications: Epitranscriptome of human neural stem cells
por: Basanta-Sanchez, Maria, et al.
Publicado: (2016)

Ribozyme Assays to Quantify the Capping Efficiency of In Vitro-Transcribed mRNA
por: Vlatkovic, Irena, et al.
Publicado: (2022)

A Phrygian Cap
por: van Kamp, Marie-Janne S., et al.
Publicado: (2013)

Helix Capping in RNA Structure
por: Lee, Jung C., et al.
Publicado: (2014)

RNA capping: progress and prospects
por: Shuman, Stewart
Publicado: (2015)

Synthetic mRNA capping
por: Muttach, Fabian, et al.
Publicado: (2017)

Myc and mRNA capping()
por: Dunn, Sianadh, et al.
Publicado: (2015)

Crystal Structure of the Dengue Virus Methyltransferase Bound to a 5′-Capped Octameric RNA
por: Yap, Li Jian, et al.
Publicado: (2010)

High resolution biosensor to test the capping level and integrity of mRNAs
por: Moya-Ramírez, Ignacio, et al.
Publicado: (2020)

Chemical capping improves template switching and enhances sequencing of small RNAs
por: Wulf, Madalee G, et al.
Publicado: (2021)

Recent insights into noncanonical 5′ capping and decapping of RNA
por: Doamekpor, Selom K., et al.
Publicado: (2022)

capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E–mRNA interactome
por: Jensen, Kirk B, et al.
Publicado: (2021)

CRISPR-Cap: multiplexed double-stranded DNA enrichment based on the CRISPR system
por: Lee, Jeewon, et al.
Publicado: (2019)

An in vitro single-molecule assay for eukaryotic cap-dependent translation initiation kinetics
por: Wang, Hongyun, et al.
Publicado: (2020)

Regulation of mRNA cap methylation
por: Cowling, Victoria H.
Publicado: (2009)

Practical Synthesis of Cap‐4 RNA
por: Leiter, Josef, et al.
Publicado: (2019)

Synthesis of 5′-Thiamine-Capped RNA
por: Möhler, Marvin, et al.
Publicado: (2020)

Cap analogs with a hydrophobic photocleavable tag enable facile purification of fully capped mRNA with various cap structures
por: Inagaki, Masahito, et al.
Publicado: (2023)

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors
por: Pflug, Alexander, et al.
Publicado: (2018)

Polyethyleneimine-capped silver nanoclusters for microRNA oligonucleotide delivery and bacterial inhibition
por: Du, Chunyuan, et al.
Publicado: (2017)

Chikungunya virus nonstructural protein 1 is a versatile RNA capping and decapping enzyme
por: Law, Michelle Cheok Yien, et al.
Publicado: (2023)

Dengue virus exploits the host tRNA epitranscriptome to promote viral replication
por: Chan, Cheryl, et al.
Publicado: (2023)

RNA capping by mitochondrial and multi-subunit RNA polymerases
por: Julius, Christina, et al.
Publicado: (2018)

Capping-RACE: a simple, accurate, and sensitive 5′ RACE method for use in prokaryotes
por: Liu, Fang, et al.
Publicado: (2018)

The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and Environmental Stress
por: Huber, Sabrina M., et al.
Publicado: (2019)

CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures
por: Galloway, Alison, et al.
Publicado: (2020)

Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores
por: Jones, Rhian, et al.
Publicado: (2023)

Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses
por: Chan, Cheryl, et al.
Publicado: (2018)

Target-responsive DNA-capped nanocontainer used for fabricating universal detector and performing logic operations
por: Wu, Li, et al.
Publicado: (2014)

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data
por: Bellos, Evangelos, et al.
Publicado: (2014)

tRNA epitranscriptomics and biased codon are linked to proteome expression in Plasmodium falciparum
por: Ng, Chee Sheng, et al.
Publicado: (2018)

RNA methyltransferases involved in 5′ cap biosynthesis
por: Byszewska, Magdalena, et al.
Publicado: (2015)

mRNA Cap Methylation in Pluripotency and Differentiation
por: Grasso, Laura, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_r93pks7bjg7pevqa1ag9rqh26o