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Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting

In this paper, we present a novel method for vision based plants phenotyping in indoor vertical farming under artificial lighting. The method combines 3D plants modeling and deep segmentation of the higher leaves, during a period of 25–30 days, related to their growth. The novelty of our approach is...

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Detalles Bibliográficos
Autores principales: Franchetti, Benjamin, Ntouskos, Valsamis, Giuliani, Pierluigi, Herman, Tiara, Barnes, Luke, Pirri, Fiora
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6848939/
https://www.ncbi.nlm.nih.gov/pubmed/31658728
http://dx.doi.org/10.3390/s19204378
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author Franchetti, Benjamin
Ntouskos, Valsamis
Giuliani, Pierluigi
Herman, Tiara
Barnes, Luke
Pirri, Fiora
author_facet Franchetti, Benjamin
Ntouskos, Valsamis
Giuliani, Pierluigi
Herman, Tiara
Barnes, Luke
Pirri, Fiora
author_sort Franchetti, Benjamin
collection PubMed
description In this paper, we present a novel method for vision based plants phenotyping in indoor vertical farming under artificial lighting. The method combines 3D plants modeling and deep segmentation of the higher leaves, during a period of 25–30 days, related to their growth. The novelty of our approach is in providing 3D reconstruction, leaf segmentation, geometric surface modeling, and deep network estimation for weight prediction to effectively measure plant growth, under three relevant phenotype features: height, weight and leaf area. Together with the vision based measurements, to verify the soundness of our proposed method, we also harvested the plants at specific time periods to take manual measurements, collecting a great amount of data. In particular, we manually collected 2592 data points related to the plant phenotype and 1728 images of the plants. This allowed us to show with a good number of experiments that the vision based methods ensure a quite accurate prediction of the considered features, providing a way to predict plant behavior, under specific conditions, without any need to resort to human measurements.
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spelling pubmed-68489392019-11-18 Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting Franchetti, Benjamin Ntouskos, Valsamis Giuliani, Pierluigi Herman, Tiara Barnes, Luke Pirri, Fiora Sensors (Basel) Article In this paper, we present a novel method for vision based plants phenotyping in indoor vertical farming under artificial lighting. The method combines 3D plants modeling and deep segmentation of the higher leaves, during a period of 25–30 days, related to their growth. The novelty of our approach is in providing 3D reconstruction, leaf segmentation, geometric surface modeling, and deep network estimation for weight prediction to effectively measure plant growth, under three relevant phenotype features: height, weight and leaf area. Together with the vision based measurements, to verify the soundness of our proposed method, we also harvested the plants at specific time periods to take manual measurements, collecting a great amount of data. In particular, we manually collected 2592 data points related to the plant phenotype and 1728 images of the plants. This allowed us to show with a good number of experiments that the vision based methods ensure a quite accurate prediction of the considered features, providing a way to predict plant behavior, under specific conditions, without any need to resort to human measurements. MDPI 2019-10-10 /pmc/articles/PMC6848939/ /pubmed/31658728 http://dx.doi.org/10.3390/s19204378 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Franchetti, Benjamin
Ntouskos, Valsamis
Giuliani, Pierluigi
Herman, Tiara
Barnes, Luke
Pirri, Fiora
Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title_full Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title_fullStr Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title_full_unstemmed Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title_short Vision Based Modeling of Plants Phenotyping in Vertical Farming under Artificial Lighting
title_sort vision based modeling of plants phenotyping in vertical farming under artificial lighting
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6848939/
https://www.ncbi.nlm.nih.gov/pubmed/31658728
http://dx.doi.org/10.3390/s19204378
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