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Multicenter CT phantoms public dataset for radiomics reproducibility tests

PURPOSE: The aim of this paper is to describe a public, open‐access, computed tomography (CT) phantom image set acquired at three centers and collected especially for radiomics reproducibility research. The dataset is useful to test radiomic features reproducibility with respect to various parameter...

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Autores principales: Kalendralis, Petros, Traverso, Alberto, Shi, Zhenwei, Zhovannik, Ivan, Monshouwer, René, Starmans, Martijn P. A., Klein, Stefan, Pfaehler, Elisabeth, Boellaard, Ronald, Dekker, Andre, Wee, Leonard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6849778/
https://www.ncbi.nlm.nih.gov/pubmed/30629299
http://dx.doi.org/10.1002/mp.13385
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author Kalendralis, Petros
Traverso, Alberto
Shi, Zhenwei
Zhovannik, Ivan
Monshouwer, René
Starmans, Martijn P. A.
Klein, Stefan
Pfaehler, Elisabeth
Boellaard, Ronald
Dekker, Andre
Wee, Leonard
author_facet Kalendralis, Petros
Traverso, Alberto
Shi, Zhenwei
Zhovannik, Ivan
Monshouwer, René
Starmans, Martijn P. A.
Klein, Stefan
Pfaehler, Elisabeth
Boellaard, Ronald
Dekker, Andre
Wee, Leonard
author_sort Kalendralis, Petros
collection PubMed
description PURPOSE: The aim of this paper is to describe a public, open‐access, computed tomography (CT) phantom image set acquired at three centers and collected especially for radiomics reproducibility research. The dataset is useful to test radiomic features reproducibility with respect to various parameters, such as acquisition settings, scanners, and reconstruction algorithms. ACQUISITION AND VALIDATION METHODS: Three phantoms were scanned in three independent institutions. Images of the following phantoms were acquired: Catphan 700 and COPDGene Phantom II (Phantom Laboratory, Greenwich, NY, USA), and the Triple modality 3D Abdominal Phantom (CIRS, Norfolk, VA, USA). Data were collected at three Dutch medical centers: MAASTRO Clinic (Maastricht, NL), Radboud University Medical Center (Nijmegen, NL), and University Medical Center Groningen (Groningen, NL) with scanners from two different manufacturers Siemens Healthcare and Philips Healthcare. The following acquisition parameter were varied in the phantom scans: slice thickness, reconstruction kernels, and tube current. DATA FORMAT AND USAGE NOTES: We made the dataset publically available on the Dutch instance of “Extensible Neuroimaging Archive Toolkit‐XNAT” (https://xnat.bmia.nl). The dataset is freely available and reusable with attribution (Creative Commons 3.0 license). POTENTIAL APPLICATIONS: Our goal was to provide a findable, open‐access, annotated, and reusable CT phantom dataset for radiomics reproducibility studies. Reproducibility testing and harmonization are fundamental requirements for wide generalizability of radiomics‐based clinical prediction models. It is highly desirable to include only reproducible features into models, to be more assured of external validity across hitherto unseen contexts. In this view, phantom data from different centers represent a valuable source of information to exclude CT radiomic features that may already be unstable with respect to simplified structures and tightly controlled scan settings. The intended extension of our shared dataset is to include other modalities and phantoms with more realistic lesion simulations.
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spelling pubmed-68497782019-11-15 Multicenter CT phantoms public dataset for radiomics reproducibility tests Kalendralis, Petros Traverso, Alberto Shi, Zhenwei Zhovannik, Ivan Monshouwer, René Starmans, Martijn P. A. Klein, Stefan Pfaehler, Elisabeth Boellaard, Ronald Dekker, Andre Wee, Leonard Med Phys Medical Physics Dataset Article PURPOSE: The aim of this paper is to describe a public, open‐access, computed tomography (CT) phantom image set acquired at three centers and collected especially for radiomics reproducibility research. The dataset is useful to test radiomic features reproducibility with respect to various parameters, such as acquisition settings, scanners, and reconstruction algorithms. ACQUISITION AND VALIDATION METHODS: Three phantoms were scanned in three independent institutions. Images of the following phantoms were acquired: Catphan 700 and COPDGene Phantom II (Phantom Laboratory, Greenwich, NY, USA), and the Triple modality 3D Abdominal Phantom (CIRS, Norfolk, VA, USA). Data were collected at three Dutch medical centers: MAASTRO Clinic (Maastricht, NL), Radboud University Medical Center (Nijmegen, NL), and University Medical Center Groningen (Groningen, NL) with scanners from two different manufacturers Siemens Healthcare and Philips Healthcare. The following acquisition parameter were varied in the phantom scans: slice thickness, reconstruction kernels, and tube current. DATA FORMAT AND USAGE NOTES: We made the dataset publically available on the Dutch instance of “Extensible Neuroimaging Archive Toolkit‐XNAT” (https://xnat.bmia.nl). The dataset is freely available and reusable with attribution (Creative Commons 3.0 license). POTENTIAL APPLICATIONS: Our goal was to provide a findable, open‐access, annotated, and reusable CT phantom dataset for radiomics reproducibility studies. Reproducibility testing and harmonization are fundamental requirements for wide generalizability of radiomics‐based clinical prediction models. It is highly desirable to include only reproducible features into models, to be more assured of external validity across hitherto unseen contexts. In this view, phantom data from different centers represent a valuable source of information to exclude CT radiomic features that may already be unstable with respect to simplified structures and tightly controlled scan settings. The intended extension of our shared dataset is to include other modalities and phantoms with more realistic lesion simulations. John Wiley and Sons Inc. 2019-01-29 2019-03 /pmc/articles/PMC6849778/ /pubmed/30629299 http://dx.doi.org/10.1002/mp.13385 Text en © 2019 The Authors Medical Physics published by Wiley Periodicals, Inc. on behalf of American Association of Physicists in Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Medical Physics Dataset Article
Kalendralis, Petros
Traverso, Alberto
Shi, Zhenwei
Zhovannik, Ivan
Monshouwer, René
Starmans, Martijn P. A.
Klein, Stefan
Pfaehler, Elisabeth
Boellaard, Ronald
Dekker, Andre
Wee, Leonard
Multicenter CT phantoms public dataset for radiomics reproducibility tests
title Multicenter CT phantoms public dataset for radiomics reproducibility tests
title_full Multicenter CT phantoms public dataset for radiomics reproducibility tests
title_fullStr Multicenter CT phantoms public dataset for radiomics reproducibility tests
title_full_unstemmed Multicenter CT phantoms public dataset for radiomics reproducibility tests
title_short Multicenter CT phantoms public dataset for radiomics reproducibility tests
title_sort multicenter ct phantoms public dataset for radiomics reproducibility tests
topic Medical Physics Dataset Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6849778/
https://www.ncbi.nlm.nih.gov/pubmed/30629299
http://dx.doi.org/10.1002/mp.13385
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