WDSPdb: an updated resource for WD40 proteins

SUMMARY: The WD40-repeat proteins are a large family of scaffold molecules that assemble complexes in various cellular processes. Obtaining their structures is the key to understanding their interaction details. We present WDSPdb 2.0, a significantly updated resource providing accurately predicted s...

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Detalles Bibliográficos
Autores principales: Ma, Jing, An, Ke, Zhou, Jing-Bo, Wu, Nuo-Si, Wang, Yang, Ye, Zhi-Qiang, Wu, Yun-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6853709/
https://www.ncbi.nlm.nih.gov/pubmed/31161214
http://dx.doi.org/10.1093/bioinformatics/btz460
Descripción
Sumario:SUMMARY: The WD40-repeat proteins are a large family of scaffold molecules that assemble complexes in various cellular processes. Obtaining their structures is the key to understanding their interaction details. We present WDSPdb 2.0, a significantly updated resource providing accurately predicted secondary and tertiary structures and featured sites annotations. Based on an optimized pipeline, WDSPdb 2.0 contains about 600 thousand entries, an increase of 10-fold, and integrates more than 37 000 variants from sources of ClinVar, Cosmic, 1000 Genomes, ExAC, IntOGen, cBioPortal and IntAct. In addition, the web site is largely improved for visualization, exploring and data downloading. AVAILABILITY AND IMPLEMENTATION: http://www.wdspdb.com/wdsp/ or http://wu.scbb.pkusz.edu.cn/wdsp/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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