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Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator
Rigid n-point water models are widely used in atomistic simulations, but have known accuracy drawbacks. Increasing the number of point charges, as well as adding electronic polarizability, are two common strategies for accuracy improvements. Both strategies come at considerable computational cost, w...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6855648/ https://www.ncbi.nlm.nih.gov/pubmed/31725740 http://dx.doi.org/10.1371/journal.pone.0224991 |
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author | Xiong, Yeyue Onufriev, Alexey V. |
author_facet | Xiong, Yeyue Onufriev, Alexey V. |
author_sort | Xiong, Yeyue |
collection | PubMed |
description | Rigid n-point water models are widely used in atomistic simulations, but have known accuracy drawbacks. Increasing the number of point charges, as well as adding electronic polarizability, are two common strategies for accuracy improvements. Both strategies come at considerable computational cost, which weighs heavily against modest possible accuracy improvements in practical simulations. In an effort to provide guidance for model development, here we have explored the limiting accuracy of “electrostatically globally optimal” n-point water models in terms of their ability to reproduce properties of water dimer—a mimic of the condensed state of water. For a given n, each model is built upon a set of reference multipole moments (e.g. ab initio) and then optimized to reproduce water dimer total dipole moment. The models are then evaluated with respect to the accuracy of reproducing the geometry of the water dimer. We find that global optimization of the charge distribution alone can deliver high accuracy of the water model: for n = 4 or n = 5, the geometry of the resulting water dimer can be almost within 5(0) of the ab initio reference, which is half that of the experimental error margin. Thus, global optimization of the charge distribution of classical n-point water models can lead to high accuracy models. We also find that while the accuracy improvement in going from n = 3 to n = 4 is substantial, the additional accuracy increase in going from n = 4 to n = 5 is marginal. Next, we have explored accuracy limitations of the standard practice of adding electronic polarizability (via a Drude particle) to a “rigid base”—pre-optimization rigid n-point water model. The resulting model (n = 3) shows a relatively small improvement in accuracy, suggesting that the strategy of merely adding the polarizability to an inferior accuracy water model used as the base cannot fix the defects of the latter. An alternative strategy in which the parameters of the rigid base model are globally optimized along with the polarizability parameter is much more promising: the resulting 3-point polarizable model out-performs even the 5-point optimal rigid model by a large margin. We suggest that future development efforts consider 3- and 4-point polarizable models where global optimization of the “rigid base” is coupled to optimization of the polarizability to deliver globally optimal solutions. |
format | Online Article Text |
id | pubmed-6855648 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-68556482019-12-07 Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator Xiong, Yeyue Onufriev, Alexey V. PLoS One Research Article Rigid n-point water models are widely used in atomistic simulations, but have known accuracy drawbacks. Increasing the number of point charges, as well as adding electronic polarizability, are two common strategies for accuracy improvements. Both strategies come at considerable computational cost, which weighs heavily against modest possible accuracy improvements in practical simulations. In an effort to provide guidance for model development, here we have explored the limiting accuracy of “electrostatically globally optimal” n-point water models in terms of their ability to reproduce properties of water dimer—a mimic of the condensed state of water. For a given n, each model is built upon a set of reference multipole moments (e.g. ab initio) and then optimized to reproduce water dimer total dipole moment. The models are then evaluated with respect to the accuracy of reproducing the geometry of the water dimer. We find that global optimization of the charge distribution alone can deliver high accuracy of the water model: for n = 4 or n = 5, the geometry of the resulting water dimer can be almost within 5(0) of the ab initio reference, which is half that of the experimental error margin. Thus, global optimization of the charge distribution of classical n-point water models can lead to high accuracy models. We also find that while the accuracy improvement in going from n = 3 to n = 4 is substantial, the additional accuracy increase in going from n = 4 to n = 5 is marginal. Next, we have explored accuracy limitations of the standard practice of adding electronic polarizability (via a Drude particle) to a “rigid base”—pre-optimization rigid n-point water model. The resulting model (n = 3) shows a relatively small improvement in accuracy, suggesting that the strategy of merely adding the polarizability to an inferior accuracy water model used as the base cannot fix the defects of the latter. An alternative strategy in which the parameters of the rigid base model are globally optimized along with the polarizability parameter is much more promising: the resulting 3-point polarizable model out-performs even the 5-point optimal rigid model by a large margin. We suggest that future development efforts consider 3- and 4-point polarizable models where global optimization of the “rigid base” is coupled to optimization of the polarizability to deliver globally optimal solutions. Public Library of Science 2019-11-14 /pmc/articles/PMC6855648/ /pubmed/31725740 http://dx.doi.org/10.1371/journal.pone.0224991 Text en © 2019 Xiong, Onufriev http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Xiong, Yeyue Onufriev, Alexey V. Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title | Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title_full | Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title_fullStr | Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title_full_unstemmed | Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title_short | Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator |
title_sort | exploring optimization strategies for improving explicit water models: rigid n-point model and polarizable model based on drude oscillator |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6855648/ https://www.ncbi.nlm.nih.gov/pubmed/31725740 http://dx.doi.org/10.1371/journal.pone.0224991 |
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