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Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we perfo...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856197/ https://www.ncbi.nlm.nih.gov/pubmed/31727908 http://dx.doi.org/10.1038/s41598-019-53074-9 |
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author | Dong, Wei Tian, Cheng Jiao, Yan Blackwell, Savannah Lou, Ge Postlethwaite, Arnold Gu, Weikuan Sun, Dianjun |
author_facet | Dong, Wei Tian, Cheng Jiao, Yan Blackwell, Savannah Lou, Ge Postlethwaite, Arnold Gu, Weikuan Sun, Dianjun |
author_sort | Dong, Wei |
collection | PubMed |
description | Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we performed multiple measures of associations, networks, eQTL mappings and expressions of key genes of interest in VC and VD functions. Several key genes in their pathways were found to be associated. Gc and Rgn play important roles connecting VC and VD pathways in mice. The r values of expression levels between Gc and Rgn in mouse spleen, liver, lung, and kidney are 0.937, 0.558, 0.901, and 0.617, respectively. The expression QTLs of Gc and Rgn are mapped onto the same locations, i.e., 68–76 MB in chromosome 7 and 26–36 MB in chromosome 9. In humans, there are positive correlations between CYP27B1 and SLC23A1 expression levels in kidney (r = 0.733) and spleen (r = 0.424). SLC23A2 and RXRA are minimally associated in both mouse and human. These data indicate that pathways of VC and VD are not independent but affect each other, and this effect is different between mice and humans during VC and VD synthesis and transportation. |
format | Online Article Text |
id | pubmed-6856197 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68561972019-12-17 Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared Dong, Wei Tian, Cheng Jiao, Yan Blackwell, Savannah Lou, Ge Postlethwaite, Arnold Gu, Weikuan Sun, Dianjun Sci Rep Article Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we performed multiple measures of associations, networks, eQTL mappings and expressions of key genes of interest in VC and VD functions. Several key genes in their pathways were found to be associated. Gc and Rgn play important roles connecting VC and VD pathways in mice. The r values of expression levels between Gc and Rgn in mouse spleen, liver, lung, and kidney are 0.937, 0.558, 0.901, and 0.617, respectively. The expression QTLs of Gc and Rgn are mapped onto the same locations, i.e., 68–76 MB in chromosome 7 and 26–36 MB in chromosome 9. In humans, there are positive correlations between CYP27B1 and SLC23A1 expression levels in kidney (r = 0.733) and spleen (r = 0.424). SLC23A2 and RXRA are minimally associated in both mouse and human. These data indicate that pathways of VC and VD are not independent but affect each other, and this effect is different between mice and humans during VC and VD synthesis and transportation. Nature Publishing Group UK 2019-11-14 /pmc/articles/PMC6856197/ /pubmed/31727908 http://dx.doi.org/10.1038/s41598-019-53074-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Dong, Wei Tian, Cheng Jiao, Yan Blackwell, Savannah Lou, Ge Postlethwaite, Arnold Gu, Weikuan Sun, Dianjun Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title | Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title_full | Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title_fullStr | Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title_full_unstemmed | Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title_short | Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared |
title_sort | multiple genome analyses reveal key genes in vitamin c and vitamin d synthesis and transport pathways are shared |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856197/ https://www.ncbi.nlm.nih.gov/pubmed/31727908 http://dx.doi.org/10.1038/s41598-019-53074-9 |
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