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Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared

Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we perfo...

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Autores principales: Dong, Wei, Tian, Cheng, Jiao, Yan, Blackwell, Savannah, Lou, Ge, Postlethwaite, Arnold, Gu, Weikuan, Sun, Dianjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856197/
https://www.ncbi.nlm.nih.gov/pubmed/31727908
http://dx.doi.org/10.1038/s41598-019-53074-9
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author Dong, Wei
Tian, Cheng
Jiao, Yan
Blackwell, Savannah
Lou, Ge
Postlethwaite, Arnold
Gu, Weikuan
Sun, Dianjun
author_facet Dong, Wei
Tian, Cheng
Jiao, Yan
Blackwell, Savannah
Lou, Ge
Postlethwaite, Arnold
Gu, Weikuan
Sun, Dianjun
author_sort Dong, Wei
collection PubMed
description Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we performed multiple measures of associations, networks, eQTL mappings and expressions of key genes of interest in VC and VD functions. Several key genes in their pathways were found to be associated. Gc and Rgn play important roles connecting VC and VD pathways in mice. The r values of expression levels between Gc and Rgn in mouse spleen, liver, lung, and kidney are 0.937, 0.558, 0.901, and 0.617, respectively. The expression QTLs of Gc and Rgn are mapped onto the same locations, i.e., 68–76 MB in chromosome 7 and 26–36 MB in chromosome 9. In humans, there are positive correlations between CYP27B1 and SLC23A1 expression levels in kidney (r = 0.733) and spleen (r = 0.424). SLC23A2 and RXRA are minimally associated in both mouse and human. These data indicate that pathways of VC and VD are not independent but affect each other, and this effect is different between mice and humans during VC and VD synthesis and transportation.
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spelling pubmed-68561972019-12-17 Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared Dong, Wei Tian, Cheng Jiao, Yan Blackwell, Savannah Lou, Ge Postlethwaite, Arnold Gu, Weikuan Sun, Dianjun Sci Rep Article Vitamin C (VC) and vitamin D (VD) have been widely used as the dietary supplements and in treatment of diseases both independently and in combination. Whether there is a connection between their pathways is critical for their therapeutic applications. Using whole-genome expression profiles, we performed multiple measures of associations, networks, eQTL mappings and expressions of key genes of interest in VC and VD functions. Several key genes in their pathways were found to be associated. Gc and Rgn play important roles connecting VC and VD pathways in mice. The r values of expression levels between Gc and Rgn in mouse spleen, liver, lung, and kidney are 0.937, 0.558, 0.901, and 0.617, respectively. The expression QTLs of Gc and Rgn are mapped onto the same locations, i.e., 68–76 MB in chromosome 7 and 26–36 MB in chromosome 9. In humans, there are positive correlations between CYP27B1 and SLC23A1 expression levels in kidney (r = 0.733) and spleen (r = 0.424). SLC23A2 and RXRA are minimally associated in both mouse and human. These data indicate that pathways of VC and VD are not independent but affect each other, and this effect is different between mice and humans during VC and VD synthesis and transportation. Nature Publishing Group UK 2019-11-14 /pmc/articles/PMC6856197/ /pubmed/31727908 http://dx.doi.org/10.1038/s41598-019-53074-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Dong, Wei
Tian, Cheng
Jiao, Yan
Blackwell, Savannah
Lou, Ge
Postlethwaite, Arnold
Gu, Weikuan
Sun, Dianjun
Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title_full Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title_fullStr Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title_full_unstemmed Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title_short Multiple genome analyses reveal key genes in Vitamin C and Vitamin D synthesis and transport pathways are shared
title_sort multiple genome analyses reveal key genes in vitamin c and vitamin d synthesis and transport pathways are shared
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856197/
https://www.ncbi.nlm.nih.gov/pubmed/31727908
http://dx.doi.org/10.1038/s41598-019-53074-9
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