Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya

Coding-complete genomes of two human coronavirus OC43 strains and one NL63 strain were obtained by metagenomic sequencing of clinical samples collected in 2017 and 2018 in Kilifi, Kenya. Maximum likelihood phylogenies showed that the OC43 strains were genetically dissimilar and that the NL63 strain...

Descripción completa

Detalles Bibliográficos
Autores principales: Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N., Nokes, D. James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856263/
https://www.ncbi.nlm.nih.gov/pubmed/31727697
http://dx.doi.org/10.1128/MRA.00730-19
_version_ 1783470546258755584
author Kamau, Everlyn
Luka, Martha M.
de Laurent, Zaydah R.
Adema, Irene
Agoti, Charles N.
Nokes, D. James
author_facet Kamau, Everlyn
Luka, Martha M.
de Laurent, Zaydah R.
Adema, Irene
Agoti, Charles N.
Nokes, D. James
author_sort Kamau, Everlyn
collection PubMed
description Coding-complete genomes of two human coronavirus OC43 strains and one NL63 strain were obtained by metagenomic sequencing of clinical samples collected in 2017 and 2018 in Kilifi, Kenya. Maximum likelihood phylogenies showed that the OC43 strains were genetically dissimilar and that the NL63 strain was closely related to NL63 genotype B viruses.
format Online
Article
Text
id pubmed-6856263
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-68562632019-11-25 Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya Kamau, Everlyn Luka, Martha M. de Laurent, Zaydah R. Adema, Irene Agoti, Charles N. Nokes, D. James Microbiol Resour Announc Genome Sequences Coding-complete genomes of two human coronavirus OC43 strains and one NL63 strain were obtained by metagenomic sequencing of clinical samples collected in 2017 and 2018 in Kilifi, Kenya. Maximum likelihood phylogenies showed that the OC43 strains were genetically dissimilar and that the NL63 strain was closely related to NL63 genotype B viruses. American Society for Microbiology 2019-11-14 /pmc/articles/PMC6856263/ /pubmed/31727697 http://dx.doi.org/10.1128/MRA.00730-19 Text en Copyright © 2019 Kamau et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Kamau, Everlyn
Luka, Martha M.
de Laurent, Zaydah R.
Adema, Irene
Agoti, Charles N.
Nokes, D. James
Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title_full Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title_fullStr Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title_full_unstemmed Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title_short Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
title_sort genome sequences of human coronavirus oc43 and nl63, associated with respiratory infections in kilifi, kenya
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856263/
https://www.ncbi.nlm.nih.gov/pubmed/31727697
http://dx.doi.org/10.1128/MRA.00730-19
work_keys_str_mv AT kamaueverlyn genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya
AT lukamartham genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya
AT delaurentzaydahr genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya
AT ademairene genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya
AT agoticharlesn genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya
AT nokesdjames genomesequencesofhumancoronavirusoc43andnl63associatedwithrespiratoryinfectionsinkilifikenya

Ejemplares similares