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Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network
Deep-UV (DUV) excitation fluorescence microscopy has potential to provide rapid diagnosis with simple technique comparing to conventional histopathology based on hematoxylin and eosin (H&E) staining. We established a fluorescent staining protocol for DUV excitation fluorescence imaging that has...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6858352/ https://www.ncbi.nlm.nih.gov/pubmed/31729459 http://dx.doi.org/10.1038/s41598-019-53405-w |
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author | Matsumoto, Tatsuya Niioka, Hirohiko Kumamoto, Yasuaki Sato, Junya Inamori, Osamu Nakao, Ryuta Harada, Yoshinori Konishi, Eiichi Otsuji, Eigo Tanaka, Hideo Miyake, Jun Takamatsu, Tetsuro |
author_facet | Matsumoto, Tatsuya Niioka, Hirohiko Kumamoto, Yasuaki Sato, Junya Inamori, Osamu Nakao, Ryuta Harada, Yoshinori Konishi, Eiichi Otsuji, Eigo Tanaka, Hideo Miyake, Jun Takamatsu, Tetsuro |
author_sort | Matsumoto, Tatsuya |
collection | PubMed |
description | Deep-UV (DUV) excitation fluorescence microscopy has potential to provide rapid diagnosis with simple technique comparing to conventional histopathology based on hematoxylin and eosin (H&E) staining. We established a fluorescent staining protocol for DUV excitation fluorescence imaging that has enabled clear discrimination of nucleoplasm, nucleolus, and cytoplasm. Fluorescence images of metastasis-positive/-negative lymph nodes of gastric cancer patients were used for patch-based training with a deep neural network (DNN) based on Inception-v3 architecture. The performance on small patches of the fluorescence images was comparable with that of H&E images. Gradient-weighted class activation mapping analysis revealed the areas where the trained model identified metastatic lesions in the images containing cancer cells. We extended the method to large-size image analysis enabling accurate detection of metastatic lesions. We discuss usefulness of DUV excitation fluorescence imaging with the aid of DNN analysis, which is promising for assisting pathologists in assessment of lymph node metastasis. |
format | Online Article Text |
id | pubmed-6858352 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68583522019-11-27 Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network Matsumoto, Tatsuya Niioka, Hirohiko Kumamoto, Yasuaki Sato, Junya Inamori, Osamu Nakao, Ryuta Harada, Yoshinori Konishi, Eiichi Otsuji, Eigo Tanaka, Hideo Miyake, Jun Takamatsu, Tetsuro Sci Rep Article Deep-UV (DUV) excitation fluorescence microscopy has potential to provide rapid diagnosis with simple technique comparing to conventional histopathology based on hematoxylin and eosin (H&E) staining. We established a fluorescent staining protocol for DUV excitation fluorescence imaging that has enabled clear discrimination of nucleoplasm, nucleolus, and cytoplasm. Fluorescence images of metastasis-positive/-negative lymph nodes of gastric cancer patients were used for patch-based training with a deep neural network (DNN) based on Inception-v3 architecture. The performance on small patches of the fluorescence images was comparable with that of H&E images. Gradient-weighted class activation mapping analysis revealed the areas where the trained model identified metastatic lesions in the images containing cancer cells. We extended the method to large-size image analysis enabling accurate detection of metastatic lesions. We discuss usefulness of DUV excitation fluorescence imaging with the aid of DNN analysis, which is promising for assisting pathologists in assessment of lymph node metastasis. Nature Publishing Group UK 2019-11-15 /pmc/articles/PMC6858352/ /pubmed/31729459 http://dx.doi.org/10.1038/s41598-019-53405-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Matsumoto, Tatsuya Niioka, Hirohiko Kumamoto, Yasuaki Sato, Junya Inamori, Osamu Nakao, Ryuta Harada, Yoshinori Konishi, Eiichi Otsuji, Eigo Tanaka, Hideo Miyake, Jun Takamatsu, Tetsuro Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title | Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title_full | Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title_fullStr | Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title_full_unstemmed | Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title_short | Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
title_sort | deep-uv excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6858352/ https://www.ncbi.nlm.nih.gov/pubmed/31729459 http://dx.doi.org/10.1038/s41598-019-53405-w |
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