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Maximal information transmission is compatible with ultrasensitive biological pathways
Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological systems outputs might feed back into inputs due to cell motility,...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6858467/ https://www.ncbi.nlm.nih.gov/pubmed/31729454 http://dx.doi.org/10.1038/s41598-019-53273-4 |
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author | Micali, Gabriele Endres, Robert G. |
author_facet | Micali, Gabriele Endres, Robert G. |
author_sort | Micali, Gabriele |
collection | PubMed |
description | Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological systems outputs might feed back into inputs due to cell motility, and the biological channel can change by mutations during evolution. Here, we show that the conventional channel capacity obtained by optimizing the input distribution for a fixed channel may not reflect the global optimum. In a new approach we analytically identify both input distributions and input-output curves that optimally transmit information, given constraints from noise and the dynamic range of the channel. We find a universal optimal input distribution only depending on the input noise, and we generalize our formalism to multiple outputs (or inputs). Applying our formalism to Escherichia coli chemotaxis, we find that its pathway is compatible with optimal information transmission despite the ultrasensitive rotary motors. |
format | Online Article Text |
id | pubmed-6858467 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68584672019-11-27 Maximal information transmission is compatible with ultrasensitive biological pathways Micali, Gabriele Endres, Robert G. Sci Rep Article Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological systems outputs might feed back into inputs due to cell motility, and the biological channel can change by mutations during evolution. Here, we show that the conventional channel capacity obtained by optimizing the input distribution for a fixed channel may not reflect the global optimum. In a new approach we analytically identify both input distributions and input-output curves that optimally transmit information, given constraints from noise and the dynamic range of the channel. We find a universal optimal input distribution only depending on the input noise, and we generalize our formalism to multiple outputs (or inputs). Applying our formalism to Escherichia coli chemotaxis, we find that its pathway is compatible with optimal information transmission despite the ultrasensitive rotary motors. Nature Publishing Group UK 2019-11-15 /pmc/articles/PMC6858467/ /pubmed/31729454 http://dx.doi.org/10.1038/s41598-019-53273-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Micali, Gabriele Endres, Robert G. Maximal information transmission is compatible with ultrasensitive biological pathways |
title | Maximal information transmission is compatible with ultrasensitive biological pathways |
title_full | Maximal information transmission is compatible with ultrasensitive biological pathways |
title_fullStr | Maximal information transmission is compatible with ultrasensitive biological pathways |
title_full_unstemmed | Maximal information transmission is compatible with ultrasensitive biological pathways |
title_short | Maximal information transmission is compatible with ultrasensitive biological pathways |
title_sort | maximal information transmission is compatible with ultrasensitive biological pathways |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6858467/ https://www.ncbi.nlm.nih.gov/pubmed/31729454 http://dx.doi.org/10.1038/s41598-019-53273-4 |
work_keys_str_mv | AT micaligabriele maximalinformationtransmissioniscompatiblewithultrasensitivebiologicalpathways AT endresrobertg maximalinformationtransmissioniscompatiblewithultrasensitivebiologicalpathways |