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A free boundary model of epithelial dynamics

In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This me...

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Detalles Bibliográficos
Autores principales: Baker, Ruth E, Parker, Andrew, Simpson, Matthew J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859506/
https://www.ncbi.nlm.nih.gov/pubmed/30576691
http://dx.doi.org/10.1016/j.jtbi.2018.12.025
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author Baker, Ruth E
Parker, Andrew
Simpson, Matthew J
author_facet Baker, Ruth E
Parker, Andrew
Simpson, Matthew J
author_sort Baker, Ruth E
collection PubMed
description In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This mechanical model of cell dynamics gives rise to a free boundary problem. We construct a corresponding continuum-limit description where the variables in the continuum limit description are expanded in powers of the small parameter 1/N, where N is the number of cells in the population. By carefully constructing the continuum limit description we obtain a free boundary partial differential equation description governing the density of the cells within the evolving domain, as well as a free boundary condition that governs the evolution of the domain. We show that care must be taken to arrive at a free boundary condition that conserves mass. By comparing averaged realisations of the cell-based model with the numerical solution of the free boundary partial differential equation, we show that the new mass-conserving boundary condition enables the coarse-grained partial differential equation model to provide very accurate predictions of the behaviour of the cell-based model, including both evolution of the cell density, and the position of the free boundary, across a range of interaction potentials and proliferation functions in the cell based model.
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spelling pubmed-68595062019-11-22 A free boundary model of epithelial dynamics Baker, Ruth E Parker, Andrew Simpson, Matthew J J Theor Biol Article In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This mechanical model of cell dynamics gives rise to a free boundary problem. We construct a corresponding continuum-limit description where the variables in the continuum limit description are expanded in powers of the small parameter 1/N, where N is the number of cells in the population. By carefully constructing the continuum limit description we obtain a free boundary partial differential equation description governing the density of the cells within the evolving domain, as well as a free boundary condition that governs the evolution of the domain. We show that care must be taken to arrive at a free boundary condition that conserves mass. By comparing averaged realisations of the cell-based model with the numerical solution of the free boundary partial differential equation, we show that the new mass-conserving boundary condition enables the coarse-grained partial differential equation model to provide very accurate predictions of the behaviour of the cell-based model, including both evolution of the cell density, and the position of the free boundary, across a range of interaction potentials and proliferation functions in the cell based model. Elsevier 2019-11-21 /pmc/articles/PMC6859506/ /pubmed/30576691 http://dx.doi.org/10.1016/j.jtbi.2018.12.025 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Baker, Ruth E
Parker, Andrew
Simpson, Matthew J
A free boundary model of epithelial dynamics
title A free boundary model of epithelial dynamics
title_full A free boundary model of epithelial dynamics
title_fullStr A free boundary model of epithelial dynamics
title_full_unstemmed A free boundary model of epithelial dynamics
title_short A free boundary model of epithelial dynamics
title_sort free boundary model of epithelial dynamics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859506/
https://www.ncbi.nlm.nih.gov/pubmed/30576691
http://dx.doi.org/10.1016/j.jtbi.2018.12.025
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