Cargando…
A free boundary model of epithelial dynamics
In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This me...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859506/ https://www.ncbi.nlm.nih.gov/pubmed/30576691 http://dx.doi.org/10.1016/j.jtbi.2018.12.025 |
_version_ | 1783471131412398080 |
---|---|
author | Baker, Ruth E Parker, Andrew Simpson, Matthew J |
author_facet | Baker, Ruth E Parker, Andrew Simpson, Matthew J |
author_sort | Baker, Ruth E |
collection | PubMed |
description | In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This mechanical model of cell dynamics gives rise to a free boundary problem. We construct a corresponding continuum-limit description where the variables in the continuum limit description are expanded in powers of the small parameter 1/N, where N is the number of cells in the population. By carefully constructing the continuum limit description we obtain a free boundary partial differential equation description governing the density of the cells within the evolving domain, as well as a free boundary condition that governs the evolution of the domain. We show that care must be taken to arrive at a free boundary condition that conserves mass. By comparing averaged realisations of the cell-based model with the numerical solution of the free boundary partial differential equation, we show that the new mass-conserving boundary condition enables the coarse-grained partial differential equation model to provide very accurate predictions of the behaviour of the cell-based model, including both evolution of the cell density, and the position of the free boundary, across a range of interaction potentials and proliferation functions in the cell based model. |
format | Online Article Text |
id | pubmed-6859506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-68595062019-11-22 A free boundary model of epithelial dynamics Baker, Ruth E Parker, Andrew Simpson, Matthew J J Theor Biol Article In this work we analyse a one-dimensional, cell-based model of an epithelial sheet. In the model, cells interact with their nearest neighbouring cells and move deterministically. Cells also proliferate stochastically, with the rate of proliferation specified as a function of the cell length. This mechanical model of cell dynamics gives rise to a free boundary problem. We construct a corresponding continuum-limit description where the variables in the continuum limit description are expanded in powers of the small parameter 1/N, where N is the number of cells in the population. By carefully constructing the continuum limit description we obtain a free boundary partial differential equation description governing the density of the cells within the evolving domain, as well as a free boundary condition that governs the evolution of the domain. We show that care must be taken to arrive at a free boundary condition that conserves mass. By comparing averaged realisations of the cell-based model with the numerical solution of the free boundary partial differential equation, we show that the new mass-conserving boundary condition enables the coarse-grained partial differential equation model to provide very accurate predictions of the behaviour of the cell-based model, including both evolution of the cell density, and the position of the free boundary, across a range of interaction potentials and proliferation functions in the cell based model. Elsevier 2019-11-21 /pmc/articles/PMC6859506/ /pubmed/30576691 http://dx.doi.org/10.1016/j.jtbi.2018.12.025 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Baker, Ruth E Parker, Andrew Simpson, Matthew J A free boundary model of epithelial dynamics |
title | A free boundary model of epithelial dynamics |
title_full | A free boundary model of epithelial dynamics |
title_fullStr | A free boundary model of epithelial dynamics |
title_full_unstemmed | A free boundary model of epithelial dynamics |
title_short | A free boundary model of epithelial dynamics |
title_sort | free boundary model of epithelial dynamics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859506/ https://www.ncbi.nlm.nih.gov/pubmed/30576691 http://dx.doi.org/10.1016/j.jtbi.2018.12.025 |
work_keys_str_mv | AT bakerruthe afreeboundarymodelofepithelialdynamics AT parkerandrew afreeboundarymodelofepithelialdynamics AT simpsonmatthewj afreeboundarymodelofepithelialdynamics AT bakerruthe freeboundarymodelofepithelialdynamics AT parkerandrew freeboundarymodelofepithelialdynamics AT simpsonmatthewj freeboundarymodelofepithelialdynamics |