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Genetic robustness of let-7 miRNA sequence–structure pairs
Genetic robustness, the preservation of evolved phenotypes against genotypic mutations, is one of the central concepts in evolution. In recent years a large body of work has focused on the origins, mechanisms, and consequences of robustness in a wide range of biological systems. In particular, resea...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859847/ https://www.ncbi.nlm.nih.gov/pubmed/31548338 http://dx.doi.org/10.1261/rna.065763.118 |
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author | He, Qijun Huang, Fenix W. Barrett, Christopher Reidys, Christian M. |
author_facet | He, Qijun Huang, Fenix W. Barrett, Christopher Reidys, Christian M. |
author_sort | He, Qijun |
collection | PubMed |
description | Genetic robustness, the preservation of evolved phenotypes against genotypic mutations, is one of the central concepts in evolution. In recent years a large body of work has focused on the origins, mechanisms, and consequences of robustness in a wide range of biological systems. In particular, research on ncRNAs studied the ability of sequences to maintain folded structures against single-point mutations. In these studies, the structure is merely a reference. However, recent work revealed evidence that structure itself contributes to the genetic robustness of ncRNAs. We follow this line of thought and consider sequence–structure pairs as the unit of evolution and introduce the spectrum of extended mutational robustness (EMR spectrum) as a measurement of genetic robustness. Our analysis of the miRNA let-7 family captures key features of structure-modulated evolution and facilitates the study of robustness against multiple-point mutations. |
format | Online Article Text |
id | pubmed-6859847 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Cold Spring Harbor Laboratory Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68598472020-12-01 Genetic robustness of let-7 miRNA sequence–structure pairs He, Qijun Huang, Fenix W. Barrett, Christopher Reidys, Christian M. RNA Bioinformatics Genetic robustness, the preservation of evolved phenotypes against genotypic mutations, is one of the central concepts in evolution. In recent years a large body of work has focused on the origins, mechanisms, and consequences of robustness in a wide range of biological systems. In particular, research on ncRNAs studied the ability of sequences to maintain folded structures against single-point mutations. In these studies, the structure is merely a reference. However, recent work revealed evidence that structure itself contributes to the genetic robustness of ncRNAs. We follow this line of thought and consider sequence–structure pairs as the unit of evolution and introduce the spectrum of extended mutational robustness (EMR spectrum) as a measurement of genetic robustness. Our analysis of the miRNA let-7 family captures key features of structure-modulated evolution and facilitates the study of robustness against multiple-point mutations. Cold Spring Harbor Laboratory Press 2019-12 /pmc/articles/PMC6859847/ /pubmed/31548338 http://dx.doi.org/10.1261/rna.065763.118 Text en © 2019 He et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed exclusively by the RNA Society for the first 12 months after the full-issue publication date (see http://rnajournal.cshlp.org/site/misc/terms.xhtml). After 12 months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/. |
spellingShingle | Bioinformatics He, Qijun Huang, Fenix W. Barrett, Christopher Reidys, Christian M. Genetic robustness of let-7 miRNA sequence–structure pairs |
title | Genetic robustness of let-7 miRNA sequence–structure pairs |
title_full | Genetic robustness of let-7 miRNA sequence–structure pairs |
title_fullStr | Genetic robustness of let-7 miRNA sequence–structure pairs |
title_full_unstemmed | Genetic robustness of let-7 miRNA sequence–structure pairs |
title_short | Genetic robustness of let-7 miRNA sequence–structure pairs |
title_sort | genetic robustness of let-7 mirna sequence–structure pairs |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6859847/ https://www.ncbi.nlm.nih.gov/pubmed/31548338 http://dx.doi.org/10.1261/rna.065763.118 |
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