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Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase

One of the main factors hampering the implementation in industry of transaminase-based processes for the synthesis of enantiopure amines is their often low storage and operational stability. Our still limited understanding of the inactivation processes undermining the stability of wild-type transami...

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Autores principales: Ruggieri, Federica, Campillo-Brocal, Jonatan C., Chen, Shan, Humble, Maria S., Walse, Björn, Logan, Derek T., Berglund, Per
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861513/
https://www.ncbi.nlm.nih.gov/pubmed/31740704
http://dx.doi.org/10.1038/s41598-019-53177-3
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author Ruggieri, Federica
Campillo-Brocal, Jonatan C.
Chen, Shan
Humble, Maria S.
Walse, Björn
Logan, Derek T.
Berglund, Per
author_facet Ruggieri, Federica
Campillo-Brocal, Jonatan C.
Chen, Shan
Humble, Maria S.
Walse, Björn
Logan, Derek T.
Berglund, Per
author_sort Ruggieri, Federica
collection PubMed
description One of the main factors hampering the implementation in industry of transaminase-based processes for the synthesis of enantiopure amines is their often low storage and operational stability. Our still limited understanding of the inactivation processes undermining the stability of wild-type transaminases represents an obstacle to improving their stability through enzyme engineering. In this paper we present a model describing the inactivation process of the well-characterized (S)-selective amine transaminase from Chromobacterium violaceum. The cornerstone of the model, supported by structural, computational, mutagenesis and biophysical data, is the central role of the catalytic lysine as a conformational switch. Upon breakage of the lysine-PLP Schiff base, the strain associated with the catalytically active lysine conformation is dissipated in a slow relaxation process capable of triggering the known structural rearrangements occurring in the holo-to-apo transition and ultimately promoting dimer dissociation. Due to the occurrence in the literature of similar PLP-dependent inactivation models valid for other non-transaminase enzymes belonging to the same fold-class, the role of the catalytic lysine as conformational switch might extend beyond the transaminase enzyme group and offer new insight to drive future non-trivial engineering strategies.
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spelling pubmed-68615132019-11-20 Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase Ruggieri, Federica Campillo-Brocal, Jonatan C. Chen, Shan Humble, Maria S. Walse, Björn Logan, Derek T. Berglund, Per Sci Rep Article One of the main factors hampering the implementation in industry of transaminase-based processes for the synthesis of enantiopure amines is their often low storage and operational stability. Our still limited understanding of the inactivation processes undermining the stability of wild-type transaminases represents an obstacle to improving their stability through enzyme engineering. In this paper we present a model describing the inactivation process of the well-characterized (S)-selective amine transaminase from Chromobacterium violaceum. The cornerstone of the model, supported by structural, computational, mutagenesis and biophysical data, is the central role of the catalytic lysine as a conformational switch. Upon breakage of the lysine-PLP Schiff base, the strain associated with the catalytically active lysine conformation is dissipated in a slow relaxation process capable of triggering the known structural rearrangements occurring in the holo-to-apo transition and ultimately promoting dimer dissociation. Due to the occurrence in the literature of similar PLP-dependent inactivation models valid for other non-transaminase enzymes belonging to the same fold-class, the role of the catalytic lysine as conformational switch might extend beyond the transaminase enzyme group and offer new insight to drive future non-trivial engineering strategies. Nature Publishing Group UK 2019-11-18 /pmc/articles/PMC6861513/ /pubmed/31740704 http://dx.doi.org/10.1038/s41598-019-53177-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ruggieri, Federica
Campillo-Brocal, Jonatan C.
Chen, Shan
Humble, Maria S.
Walse, Björn
Logan, Derek T.
Berglund, Per
Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title_full Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title_fullStr Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title_full_unstemmed Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title_short Insight into the dimer dissociation process of the Chromobacterium violaceum (S)-selective amine transaminase
title_sort insight into the dimer dissociation process of the chromobacterium violaceum (s)-selective amine transaminase
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861513/
https://www.ncbi.nlm.nih.gov/pubmed/31740704
http://dx.doi.org/10.1038/s41598-019-53177-3
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