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Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis

Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcr...

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Autores principales: Lucchetti, Chiara, Genchi, Marco, Venco, Luigi, Bazzocchi, Chiara, Kramer, Laura H., Vismarra, Alice
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861604/
https://www.ncbi.nlm.nih.gov/pubmed/31763192
http://dx.doi.org/10.1016/j.mex.2019.10.023
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author Lucchetti, Chiara
Genchi, Marco
Venco, Luigi
Bazzocchi, Chiara
Kramer, Laura H.
Vismarra, Alice
author_facet Lucchetti, Chiara
Genchi, Marco
Venco, Luigi
Bazzocchi, Chiara
Kramer, Laura H.
Vismarra, Alice
author_sort Lucchetti, Chiara
collection PubMed
description Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcriptomic and genome analysis has becoming increasingly popular. Although several commercial kits are available for the single extraction of either DNA or RNA, no specific protocol has been described for simultaneous extraction of DNA and RNA from such a large organism like an adult D. immitis, where female worms generally reach ∼25 cm in length. More importantly, adult worms of D. immitis can only be obtained either through necropsy of experimentally infected dogs or by minimally-invasive surgical heartworm removal of naturally infected dogs. This makes each individual worm sample extremely important. Thus, in the context of a project aimed at the evaluation of both gene expression analysis and Wolbachia population assessment following different treatments, an optimized protocol for co-extraction of DNA and RNA from a single sample of adult D. immitis has been developed. • An optimized method for DNA/RNA co-extraction from large size nematodes using TRIzol® reagent. • Allows maximum exploitation of unique samples as adults of D. immitis.
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spelling pubmed-68616042019-11-22 Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis Lucchetti, Chiara Genchi, Marco Venco, Luigi Bazzocchi, Chiara Kramer, Laura H. Vismarra, Alice MethodsX Veterinary Science and Veterinary Medicine Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcriptomic and genome analysis has becoming increasingly popular. Although several commercial kits are available for the single extraction of either DNA or RNA, no specific protocol has been described for simultaneous extraction of DNA and RNA from such a large organism like an adult D. immitis, where female worms generally reach ∼25 cm in length. More importantly, adult worms of D. immitis can only be obtained either through necropsy of experimentally infected dogs or by minimally-invasive surgical heartworm removal of naturally infected dogs. This makes each individual worm sample extremely important. Thus, in the context of a project aimed at the evaluation of both gene expression analysis and Wolbachia population assessment following different treatments, an optimized protocol for co-extraction of DNA and RNA from a single sample of adult D. immitis has been developed. • An optimized method for DNA/RNA co-extraction from large size nematodes using TRIzol® reagent. • Allows maximum exploitation of unique samples as adults of D. immitis. Elsevier 2019-10-31 /pmc/articles/PMC6861604/ /pubmed/31763192 http://dx.doi.org/10.1016/j.mex.2019.10.023 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Veterinary Science and Veterinary Medicine
Lucchetti, Chiara
Genchi, Marco
Venco, Luigi
Bazzocchi, Chiara
Kramer, Laura H.
Vismarra, Alice
Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title_full Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title_fullStr Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title_full_unstemmed Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title_short Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
title_sort optimized protocol for dna/rna co-extraction from adults of dirofilaria immitis
topic Veterinary Science and Veterinary Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861604/
https://www.ncbi.nlm.nih.gov/pubmed/31763192
http://dx.doi.org/10.1016/j.mex.2019.10.023
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