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Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis
Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcr...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861604/ https://www.ncbi.nlm.nih.gov/pubmed/31763192 http://dx.doi.org/10.1016/j.mex.2019.10.023 |
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author | Lucchetti, Chiara Genchi, Marco Venco, Luigi Bazzocchi, Chiara Kramer, Laura H. Vismarra, Alice |
author_facet | Lucchetti, Chiara Genchi, Marco Venco, Luigi Bazzocchi, Chiara Kramer, Laura H. Vismarra, Alice |
author_sort | Lucchetti, Chiara |
collection | PubMed |
description | Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcriptomic and genome analysis has becoming increasingly popular. Although several commercial kits are available for the single extraction of either DNA or RNA, no specific protocol has been described for simultaneous extraction of DNA and RNA from such a large organism like an adult D. immitis, where female worms generally reach ∼25 cm in length. More importantly, adult worms of D. immitis can only be obtained either through necropsy of experimentally infected dogs or by minimally-invasive surgical heartworm removal of naturally infected dogs. This makes each individual worm sample extremely important. Thus, in the context of a project aimed at the evaluation of both gene expression analysis and Wolbachia population assessment following different treatments, an optimized protocol for co-extraction of DNA and RNA from a single sample of adult D. immitis has been developed. • An optimized method for DNA/RNA co-extraction from large size nematodes using TRIzol® reagent. • Allows maximum exploitation of unique samples as adults of D. immitis. |
format | Online Article Text |
id | pubmed-6861604 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-68616042019-11-22 Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis Lucchetti, Chiara Genchi, Marco Venco, Luigi Bazzocchi, Chiara Kramer, Laura H. Vismarra, Alice MethodsX Veterinary Science and Veterinary Medicine Dirofilaria immitis, the etiologic agent of canine heartworm disease, like several other filarial nematodes, harbors the bacterial endosymbiont Wolbachia. To investigate metabolic and functional pathways of D. immitis and Wolbachia individually, along with their interactions, the use of both transcriptomic and genome analysis has becoming increasingly popular. Although several commercial kits are available for the single extraction of either DNA or RNA, no specific protocol has been described for simultaneous extraction of DNA and RNA from such a large organism like an adult D. immitis, where female worms generally reach ∼25 cm in length. More importantly, adult worms of D. immitis can only be obtained either through necropsy of experimentally infected dogs or by minimally-invasive surgical heartworm removal of naturally infected dogs. This makes each individual worm sample extremely important. Thus, in the context of a project aimed at the evaluation of both gene expression analysis and Wolbachia population assessment following different treatments, an optimized protocol for co-extraction of DNA and RNA from a single sample of adult D. immitis has been developed. • An optimized method for DNA/RNA co-extraction from large size nematodes using TRIzol® reagent. • Allows maximum exploitation of unique samples as adults of D. immitis. Elsevier 2019-10-31 /pmc/articles/PMC6861604/ /pubmed/31763192 http://dx.doi.org/10.1016/j.mex.2019.10.023 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Veterinary Science and Veterinary Medicine Lucchetti, Chiara Genchi, Marco Venco, Luigi Bazzocchi, Chiara Kramer, Laura H. Vismarra, Alice Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title | Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title_full | Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title_fullStr | Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title_full_unstemmed | Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title_short | Optimized protocol for DNA/RNA co-extraction from adults of Dirofilaria immitis |
title_sort | optimized protocol for dna/rna co-extraction from adults of dirofilaria immitis |
topic | Veterinary Science and Veterinary Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861604/ https://www.ncbi.nlm.nih.gov/pubmed/31763192 http://dx.doi.org/10.1016/j.mex.2019.10.023 |
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