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Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus

Type 2 diabetes mellitus (T2DM) is characterized by hyperglycemia. The liver has a critical role in regulating glucose homeostasis. The present study aimed to analyze hepatic gene expression profiles and to identify the key genes and pathways involved in T2DM. Gene expression profiles of 10 patients...

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Autores principales: Chen, Zhe, Yuan, Weiqu, Liu, Tao, Huang, Danping, Xiang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861877/
https://www.ncbi.nlm.nih.gov/pubmed/31772629
http://dx.doi.org/10.3892/etm.2019.8092
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author Chen, Zhe
Yuan, Weiqu
Liu, Tao
Huang, Danping
Xiang, Lei
author_facet Chen, Zhe
Yuan, Weiqu
Liu, Tao
Huang, Danping
Xiang, Lei
author_sort Chen, Zhe
collection PubMed
description Type 2 diabetes mellitus (T2DM) is characterized by hyperglycemia. The liver has a critical role in regulating glucose homeostasis. The present study aimed to analyze hepatic gene expression profiles and to identify the key genes and pathways involved in T2DM. Gene expression profiles of 10 patients with T2DM and 7 subjects with normal glucose tolerance were downloaded from the Gene Expression Omnibus database. Subsequently, differentially expressed genes (DEGs) were identified and functional enrichment analysis was performed. In addition, a protein-protein interaction network was built and hub genes were identified. In total, 1,320 DEGs were identified, including 698 up- and 622 downregulated genes, and these were mainly enriched in positive regulation of transcription from RNA polymerase II promoter, cell adhesion, inflammatory response, positive regulation of apoptotic process, signal transduction and the Tolllike receptor signaling pathway. A total of 8 hub genes (G-protein subunit gamma transducin 2, ubiquitinconjugating enzyme E2 D1, glutamate metabotropic receptor 1, G-protein signaling modulator 1, C-X-C motif chemokine ligand 9, neurotensin, purinergic receptor P2Y1 and ring finger protein 41) were screened from the network. The present study may contribute to the elucidation of the hepatic pathology of T2DM.
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spelling pubmed-68618772019-11-26 Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus Chen, Zhe Yuan, Weiqu Liu, Tao Huang, Danping Xiang, Lei Exp Ther Med Articles Type 2 diabetes mellitus (T2DM) is characterized by hyperglycemia. The liver has a critical role in regulating glucose homeostasis. The present study aimed to analyze hepatic gene expression profiles and to identify the key genes and pathways involved in T2DM. Gene expression profiles of 10 patients with T2DM and 7 subjects with normal glucose tolerance were downloaded from the Gene Expression Omnibus database. Subsequently, differentially expressed genes (DEGs) were identified and functional enrichment analysis was performed. In addition, a protein-protein interaction network was built and hub genes were identified. In total, 1,320 DEGs were identified, including 698 up- and 622 downregulated genes, and these were mainly enriched in positive regulation of transcription from RNA polymerase II promoter, cell adhesion, inflammatory response, positive regulation of apoptotic process, signal transduction and the Tolllike receptor signaling pathway. A total of 8 hub genes (G-protein subunit gamma transducin 2, ubiquitinconjugating enzyme E2 D1, glutamate metabotropic receptor 1, G-protein signaling modulator 1, C-X-C motif chemokine ligand 9, neurotensin, purinergic receptor P2Y1 and ring finger protein 41) were screened from the network. The present study may contribute to the elucidation of the hepatic pathology of T2DM. D.A. Spandidos 2019-12 2019-10-10 /pmc/articles/PMC6861877/ /pubmed/31772629 http://dx.doi.org/10.3892/etm.2019.8092 Text en Copyright: © Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Chen, Zhe
Yuan, Weiqu
Liu, Tao
Huang, Danping
Xiang, Lei
Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title_full Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title_fullStr Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title_full_unstemmed Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title_short Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
title_sort bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6861877/
https://www.ncbi.nlm.nih.gov/pubmed/31772629
http://dx.doi.org/10.3892/etm.2019.8092
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