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Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5

Gluconacetobacter diazotrophicus PAL5 (GDI) is an endophytic bacterium with potential biotechnological applications in industry and agronomy. The recent description of its complete genome and its principal metabolic enzymes suggests that glucose metabolism is accomplished through the pentose phospha...

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Autores principales: Ramírez-Nava, Edson Jiovany, Ortega-Cuellar, Daniel, González-Valdez, Abigail, Castillo-Rodríguez, Rosa Angélica, Ponce-Soto, Gabriel Yaxal, Hernández-Ochoa, Beatriz, Cárdenas-Rodríguez, Noemí, Martínez-Rosas, Víctor, Morales-Luna, Laura, Serrano-Posada, Hugo, Sierra-Palacios, Edgar, Arreguin-Espinosa, Roberto, Cuevas-Cruz, Miguel, Rocha-Ramírez, Luz María, Pérez de la Cruz, Verónica, Marcial-Quino, Jaime, Gómez-Manzo, Saúl
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6862599/
https://www.ncbi.nlm.nih.gov/pubmed/31652968
http://dx.doi.org/10.3390/ijms20215279
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author Ramírez-Nava, Edson Jiovany
Ortega-Cuellar, Daniel
González-Valdez, Abigail
Castillo-Rodríguez, Rosa Angélica
Ponce-Soto, Gabriel Yaxal
Hernández-Ochoa, Beatriz
Cárdenas-Rodríguez, Noemí
Martínez-Rosas, Víctor
Morales-Luna, Laura
Serrano-Posada, Hugo
Sierra-Palacios, Edgar
Arreguin-Espinosa, Roberto
Cuevas-Cruz, Miguel
Rocha-Ramírez, Luz María
Pérez de la Cruz, Verónica
Marcial-Quino, Jaime
Gómez-Manzo, Saúl
author_facet Ramírez-Nava, Edson Jiovany
Ortega-Cuellar, Daniel
González-Valdez, Abigail
Castillo-Rodríguez, Rosa Angélica
Ponce-Soto, Gabriel Yaxal
Hernández-Ochoa, Beatriz
Cárdenas-Rodríguez, Noemí
Martínez-Rosas, Víctor
Morales-Luna, Laura
Serrano-Posada, Hugo
Sierra-Palacios, Edgar
Arreguin-Espinosa, Roberto
Cuevas-Cruz, Miguel
Rocha-Ramírez, Luz María
Pérez de la Cruz, Verónica
Marcial-Quino, Jaime
Gómez-Manzo, Saúl
author_sort Ramírez-Nava, Edson Jiovany
collection PubMed
description Gluconacetobacter diazotrophicus PAL5 (GDI) is an endophytic bacterium with potential biotechnological applications in industry and agronomy. The recent description of its complete genome and its principal metabolic enzymes suggests that glucose metabolism is accomplished through the pentose phosphate pathway (PPP); however, the enzymes participating in this pathway have not yet been characterized in detail. The objective of the present work was to clone, purify, and biochemically and physicochemically characterize glucose-6-phosphate dehydrogenase (G6PD) from GDI. The gene was cloned and expressed as a tagged protein in E. coli to be purified by affinity chromatography. The native state of the G6PD protein in the solution was found to be a tetramer with optimal activity at pH 8.8 and a temperature between 37 and 50 °C. The apparent Km values for G6P and nicotinamide adenine dinucleotide phosphate (NADP(+)) were 63 and 7.2 μM, respectively. Finally, from the amino acid sequence a three-dimensional (3D) model was obtained, which allowed the arrangement of the amino acids involved in the catalytic activity, which are conserved (RIDHYLGKE, GxGGDLT, and EKPxG) with those of other species, to be identified. This characterization of the enzyme could help to identify new environmental conditions for the knowledge of the plant–microorganism interactions and a better use of GDI in new technological applications.
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spelling pubmed-68625992019-12-05 Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5 Ramírez-Nava, Edson Jiovany Ortega-Cuellar, Daniel González-Valdez, Abigail Castillo-Rodríguez, Rosa Angélica Ponce-Soto, Gabriel Yaxal Hernández-Ochoa, Beatriz Cárdenas-Rodríguez, Noemí Martínez-Rosas, Víctor Morales-Luna, Laura Serrano-Posada, Hugo Sierra-Palacios, Edgar Arreguin-Espinosa, Roberto Cuevas-Cruz, Miguel Rocha-Ramírez, Luz María Pérez de la Cruz, Verónica Marcial-Quino, Jaime Gómez-Manzo, Saúl Int J Mol Sci Article Gluconacetobacter diazotrophicus PAL5 (GDI) is an endophytic bacterium with potential biotechnological applications in industry and agronomy. The recent description of its complete genome and its principal metabolic enzymes suggests that glucose metabolism is accomplished through the pentose phosphate pathway (PPP); however, the enzymes participating in this pathway have not yet been characterized in detail. The objective of the present work was to clone, purify, and biochemically and physicochemically characterize glucose-6-phosphate dehydrogenase (G6PD) from GDI. The gene was cloned and expressed as a tagged protein in E. coli to be purified by affinity chromatography. The native state of the G6PD protein in the solution was found to be a tetramer with optimal activity at pH 8.8 and a temperature between 37 and 50 °C. The apparent Km values for G6P and nicotinamide adenine dinucleotide phosphate (NADP(+)) were 63 and 7.2 μM, respectively. Finally, from the amino acid sequence a three-dimensional (3D) model was obtained, which allowed the arrangement of the amino acids involved in the catalytic activity, which are conserved (RIDHYLGKE, GxGGDLT, and EKPxG) with those of other species, to be identified. This characterization of the enzyme could help to identify new environmental conditions for the knowledge of the plant–microorganism interactions and a better use of GDI in new technological applications. MDPI 2019-10-24 /pmc/articles/PMC6862599/ /pubmed/31652968 http://dx.doi.org/10.3390/ijms20215279 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ramírez-Nava, Edson Jiovany
Ortega-Cuellar, Daniel
González-Valdez, Abigail
Castillo-Rodríguez, Rosa Angélica
Ponce-Soto, Gabriel Yaxal
Hernández-Ochoa, Beatriz
Cárdenas-Rodríguez, Noemí
Martínez-Rosas, Víctor
Morales-Luna, Laura
Serrano-Posada, Hugo
Sierra-Palacios, Edgar
Arreguin-Espinosa, Roberto
Cuevas-Cruz, Miguel
Rocha-Ramírez, Luz María
Pérez de la Cruz, Verónica
Marcial-Quino, Jaime
Gómez-Manzo, Saúl
Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title_full Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title_fullStr Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title_full_unstemmed Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title_short Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5
title_sort molecular cloning and exploration of the biochemical and functional analysis of recombinant glucose-6-phosphate dehydrogenase from gluconoacetobacter diazotrophicus pal5
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6862599/
https://www.ncbi.nlm.nih.gov/pubmed/31652968
http://dx.doi.org/10.3390/ijms20215279
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