Cargando…

Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)

To fully support their role in translational and personalized medicine, biorepositories and biobanks must continue to advance the annotation of their biospecimens with robust clinical and laboratory data. Translational research and personalized medicine require well-documented and up-to-date informa...

Descripción completa

Detalles Bibliográficos
Autores principales: Mudaranthakam, Dinesh Pal, Shergina, Elena, Park, Michele, Thompson, Jeffrey, Streeter, David, Hu, Jinxiang, Wick, Jo, Gajewski, Byron, Koestler, Devin C, Godwin, Andrew K, Jensen, Roy A, Mayo, Matthew S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6864036/
https://www.ncbi.nlm.nih.gov/pubmed/31798300
http://dx.doi.org/10.1177/1176935119886831
_version_ 1783471810097971200
author Mudaranthakam, Dinesh Pal
Shergina, Elena
Park, Michele
Thompson, Jeffrey
Streeter, David
Hu, Jinxiang
Wick, Jo
Gajewski, Byron
Koestler, Devin C
Godwin, Andrew K
Jensen, Roy A
Mayo, Matthew S
author_facet Mudaranthakam, Dinesh Pal
Shergina, Elena
Park, Michele
Thompson, Jeffrey
Streeter, David
Hu, Jinxiang
Wick, Jo
Gajewski, Byron
Koestler, Devin C
Godwin, Andrew K
Jensen, Roy A
Mayo, Matthew S
author_sort Mudaranthakam, Dinesh Pal
collection PubMed
description To fully support their role in translational and personalized medicine, biorepositories and biobanks must continue to advance the annotation of their biospecimens with robust clinical and laboratory data. Translational research and personalized medicine require well-documented and up-to-date information, but the infrastructure used to support biorepositories and biobanks can easily be out of sync with the host institution. To assist researchers and provide them with accurate pathological, epidemiological, and bio-molecular data, the Biospecimen Repository Core Facility (BRCF) at the University of Kansas Medical Center (KUMC) merges data from medical records, the tumor registry, and pathology reports using the Curated Cancer Clinical Outcomes Database (C3OD). In this report, we describe the utilization of C3OD to optimally retrieve and dispense biospecimen samples using these 3 data sources and demonstrate how C3OD greatly increases the efficiency of obtaining biospecimen samples for the researchers.
format Online
Article
Text
id pubmed-6864036
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher SAGE Publications
record_format MEDLINE/PubMed
spelling pubmed-68640362019-12-03 Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD) Mudaranthakam, Dinesh Pal Shergina, Elena Park, Michele Thompson, Jeffrey Streeter, David Hu, Jinxiang Wick, Jo Gajewski, Byron Koestler, Devin C Godwin, Andrew K Jensen, Roy A Mayo, Matthew S Cancer Inform Short Report To fully support their role in translational and personalized medicine, biorepositories and biobanks must continue to advance the annotation of their biospecimens with robust clinical and laboratory data. Translational research and personalized medicine require well-documented and up-to-date information, but the infrastructure used to support biorepositories and biobanks can easily be out of sync with the host institution. To assist researchers and provide them with accurate pathological, epidemiological, and bio-molecular data, the Biospecimen Repository Core Facility (BRCF) at the University of Kansas Medical Center (KUMC) merges data from medical records, the tumor registry, and pathology reports using the Curated Cancer Clinical Outcomes Database (C3OD). In this report, we describe the utilization of C3OD to optimally retrieve and dispense biospecimen samples using these 3 data sources and demonstrate how C3OD greatly increases the efficiency of obtaining biospecimen samples for the researchers. SAGE Publications 2019-11-18 /pmc/articles/PMC6864036/ /pubmed/31798300 http://dx.doi.org/10.1177/1176935119886831 Text en © The Author(s) 2019 http://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution 4.0 License (http://www.creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Short Report
Mudaranthakam, Dinesh Pal
Shergina, Elena
Park, Michele
Thompson, Jeffrey
Streeter, David
Hu, Jinxiang
Wick, Jo
Gajewski, Byron
Koestler, Devin C
Godwin, Andrew K
Jensen, Roy A
Mayo, Matthew S
Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title_full Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title_fullStr Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title_full_unstemmed Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title_short Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)
title_sort optimizing retrieval of biospecimens using the curated cancer clinical outcomes database (c3od)
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6864036/
https://www.ncbi.nlm.nih.gov/pubmed/31798300
http://dx.doi.org/10.1177/1176935119886831
work_keys_str_mv AT mudaranthakamdineshpal optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT sherginaelena optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT parkmichele optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT thompsonjeffrey optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT streeterdavid optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT hujinxiang optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT wickjo optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT gajewskibyron optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT koestlerdevinc optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT godwinandrewk optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT jensenroya optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od
AT mayomatthews optimizingretrievalofbiospecimensusingthecuratedcancerclinicaloutcomesdatabasec3od