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A Chemometric Analysis of Deep-Sea Natural Products

Deep-sea natural products have been created by unique marine organisms that thrive in a challenging environment of extreme conditions for its inhabitants. In this study, 179 deep-sea natural products isolated from 2009 to 2013 were investigated by analysing their physicochemical properties that are...

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Autor principal: Pilkington, Lisa I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6865307/
https://www.ncbi.nlm.nih.gov/pubmed/31683674
http://dx.doi.org/10.3390/molecules24213942
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author Pilkington, Lisa I.
author_facet Pilkington, Lisa I.
author_sort Pilkington, Lisa I.
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description Deep-sea natural products have been created by unique marine organisms that thrive in a challenging environment of extreme conditions for its inhabitants. In this study, 179 deep-sea natural products isolated from 2009 to 2013 were investigated by analysing their physicochemical properties that are important indicators of the ADMET (Absorption, Distribution, Metabolism, Excretion and Toxicity) profile of a compound. The study and analysis of these molecular descriptors and characteristics enabled the defining of these compounds in various chemical spaces, particularly as an indication of their drug-likeness and position in chemical space and is the first to be conducted to analyse deep-sea derived natural products. It was found that ~40% of all deep-sea natural products were drug-like and 2/3 were within Known Drug Space (KDS), highlighting the high drug-likeness of a significant proportion of deep-sea natural products, most of which have already been shown to have notable biological activities, that should be further investigated as potential therapeutics. Furthermore, this study was able to reveal the general structural differences between compounds from Animalia, Bacteria and Fungi organisms where it was observed that natural products from members of the Animalia kingdom are structurally more varied than compounds from bacteria and fungi. It was also noted that, in general, fungi-derived compounds occupy a more favourable position in drug-like chemical space and are a rich and promising source of biologically-active natural products for the purposes of drug development and therapeutic application.
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spelling pubmed-68653072019-12-09 A Chemometric Analysis of Deep-Sea Natural Products Pilkington, Lisa I. Molecules Article Deep-sea natural products have been created by unique marine organisms that thrive in a challenging environment of extreme conditions for its inhabitants. In this study, 179 deep-sea natural products isolated from 2009 to 2013 were investigated by analysing their physicochemical properties that are important indicators of the ADMET (Absorption, Distribution, Metabolism, Excretion and Toxicity) profile of a compound. The study and analysis of these molecular descriptors and characteristics enabled the defining of these compounds in various chemical spaces, particularly as an indication of their drug-likeness and position in chemical space and is the first to be conducted to analyse deep-sea derived natural products. It was found that ~40% of all deep-sea natural products were drug-like and 2/3 were within Known Drug Space (KDS), highlighting the high drug-likeness of a significant proportion of deep-sea natural products, most of which have already been shown to have notable biological activities, that should be further investigated as potential therapeutics. Furthermore, this study was able to reveal the general structural differences between compounds from Animalia, Bacteria and Fungi organisms where it was observed that natural products from members of the Animalia kingdom are structurally more varied than compounds from bacteria and fungi. It was also noted that, in general, fungi-derived compounds occupy a more favourable position in drug-like chemical space and are a rich and promising source of biologically-active natural products for the purposes of drug development and therapeutic application. MDPI 2019-10-31 /pmc/articles/PMC6865307/ /pubmed/31683674 http://dx.doi.org/10.3390/molecules24213942 Text en © 2019 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pilkington, Lisa I.
A Chemometric Analysis of Deep-Sea Natural Products
title A Chemometric Analysis of Deep-Sea Natural Products
title_full A Chemometric Analysis of Deep-Sea Natural Products
title_fullStr A Chemometric Analysis of Deep-Sea Natural Products
title_full_unstemmed A Chemometric Analysis of Deep-Sea Natural Products
title_short A Chemometric Analysis of Deep-Sea Natural Products
title_sort chemometric analysis of deep-sea natural products
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6865307/
https://www.ncbi.nlm.nih.gov/pubmed/31683674
http://dx.doi.org/10.3390/molecules24213942
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