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Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4

Chitinases possess an extraordinary ability to directly hydrolyze highly insoluble chitin polymers to low-molecular-weight chito-oligomers, which possess particular biological functions, such as elicitor action and antitumor activity. A novel strain, Paenibacillus xylanilyticus W4, which was isolate...

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Detalles Bibliográficos
Autores principales: Liao, Weifang, Liu, Pulin, Liao, Weijie, Miao, Lihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6865854/
https://www.ncbi.nlm.nih.gov/pubmed/31670768
http://dx.doi.org/10.1093/gbe/evz241
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author Liao, Weifang
Liu, Pulin
Liao, Weijie
Miao, Lihong
author_facet Liao, Weifang
Liu, Pulin
Liao, Weijie
Miao, Lihong
author_sort Liao, Weifang
collection PubMed
description Chitinases possess an extraordinary ability to directly hydrolyze highly insoluble chitin polymers to low-molecular-weight chito-oligomers, which possess particular biological functions, such as elicitor action and antitumor activity. A novel strain, Paenibacillus xylanilyticus W4, which was isolated from soil, showed strong chitin degradation activity. Here, we first reported the complete genome information of P. xylanilyticus. Paenibacillus xylanilyticus W4 contains a 5,532,141 bp single circular chromosome with 47.33% GC content. The genome contains 5,996 genes, including 39 rRNA- and 109 tRNA-coding genes. Phylogenetic analysis and Genome-to-Genome Distance revealed its taxonomic characterization into a separate family. Six glycoside hydrolase 18 (GH18) and 2 GH23 enzymes involved in chitin degradation. Although many of the chitinases were conserved in Paenibacillus, several GH18 chitinases share high similarity with Bacillus circulans. The genome information provided here could benefit for understanding the chitin-degrading properties of P. xylanilyticus as well as its potential application in biotechnological and pharmaceutical fields.
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spelling pubmed-68658542019-11-25 Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4 Liao, Weifang Liu, Pulin Liao, Weijie Miao, Lihong Genome Biol Evol Genome Report Chitinases possess an extraordinary ability to directly hydrolyze highly insoluble chitin polymers to low-molecular-weight chito-oligomers, which possess particular biological functions, such as elicitor action and antitumor activity. A novel strain, Paenibacillus xylanilyticus W4, which was isolated from soil, showed strong chitin degradation activity. Here, we first reported the complete genome information of P. xylanilyticus. Paenibacillus xylanilyticus W4 contains a 5,532,141 bp single circular chromosome with 47.33% GC content. The genome contains 5,996 genes, including 39 rRNA- and 109 tRNA-coding genes. Phylogenetic analysis and Genome-to-Genome Distance revealed its taxonomic characterization into a separate family. Six glycoside hydrolase 18 (GH18) and 2 GH23 enzymes involved in chitin degradation. Although many of the chitinases were conserved in Paenibacillus, several GH18 chitinases share high similarity with Bacillus circulans. The genome information provided here could benefit for understanding the chitin-degrading properties of P. xylanilyticus as well as its potential application in biotechnological and pharmaceutical fields. Oxford University Press 2019-10-31 /pmc/articles/PMC6865854/ /pubmed/31670768 http://dx.doi.org/10.1093/gbe/evz241 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Liao, Weifang
Liu, Pulin
Liao, Weijie
Miao, Lihong
Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title_full Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title_fullStr Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title_full_unstemmed Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title_short Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4
title_sort complete genome of the chitin-degrading bacterium, paenibacillus xylanilyticus w4
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6865854/
https://www.ncbi.nlm.nih.gov/pubmed/31670768
http://dx.doi.org/10.1093/gbe/evz241
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