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Minimum Information about an Uncultivated Virus Genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include viru...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Nature Publishing Group US
2018
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871006/ https://www.ncbi.nlm.nih.gov/pubmed/30556814 http://dx.doi.org/10.1038/nbt.4306 |
| _version_ | 1783472412197650432 |
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| author | Roux, Simon Adriaenssens, Evelien M Dutilh, Bas E Koonin, Eugene V Kropinski, Andrew M Krupovic, Mart Kuhn, Jens H Lavigne, Rob Brister, J Rodney Varsani, Arvind Amid, Clara Aziz, Ramy K Bordenstein, Seth R Bork, Peer Breitbart, Mya Cochrane, Guy R Daly, Rebecca A Desnues, Christelle Duhaime, Melissa B Emerson, Joanne B Enault, François Fuhrman, Jed A Hingamp, Pascal Hugenholtz, Philip Hurwitz, Bonnie L Ivanova, Natalia N Labonté, Jessica M Lee, Kyung-Bum Malmstrom, Rex R Martinez-Garcia, Manuel Mizrachi, Ilene Karsch Ogata, Hiroyuki Páez-Espino, David Petit, Marie-Agnès Putonti, Catherine Rattei, Thomas Reyes, Alejandro Rodriguez-Valera, Francisco Rosario, Karyna Schriml, Lynn Schulz, Frederik Steward, Grieg F Sullivan, Matthew B Sunagawa, Shinichi Suttle, Curtis A Temperton, Ben Tringe, Susannah G Thurber, Rebecca Vega Webster, Nicole S Whiteson, Katrine L Wilhelm, Steven W Wommack, K Eric Woyke, Tanja Wrighton, Kelly C Yilmaz, Pelin Yoshida, Takashi Young, Mark J Yutin, Natalya Allen, Lisa Zeigler Kyrpides, Nikos C Eloe-Fadrosh, Emiley A |
| author_facet | Roux, Simon Adriaenssens, Evelien M Dutilh, Bas E Koonin, Eugene V Kropinski, Andrew M Krupovic, Mart Kuhn, Jens H Lavigne, Rob Brister, J Rodney Varsani, Arvind Amid, Clara Aziz, Ramy K Bordenstein, Seth R Bork, Peer Breitbart, Mya Cochrane, Guy R Daly, Rebecca A Desnues, Christelle Duhaime, Melissa B Emerson, Joanne B Enault, François Fuhrman, Jed A Hingamp, Pascal Hugenholtz, Philip Hurwitz, Bonnie L Ivanova, Natalia N Labonté, Jessica M Lee, Kyung-Bum Malmstrom, Rex R Martinez-Garcia, Manuel Mizrachi, Ilene Karsch Ogata, Hiroyuki Páez-Espino, David Petit, Marie-Agnès Putonti, Catherine Rattei, Thomas Reyes, Alejandro Rodriguez-Valera, Francisco Rosario, Karyna Schriml, Lynn Schulz, Frederik Steward, Grieg F Sullivan, Matthew B Sunagawa, Shinichi Suttle, Curtis A Temperton, Ben Tringe, Susannah G Thurber, Rebecca Vega Webster, Nicole S Whiteson, Katrine L Wilhelm, Steven W Wommack, K Eric Woyke, Tanja Wrighton, Kelly C Yilmaz, Pelin Yoshida, Takashi Young, Mark J Yutin, Natalya Allen, Lisa Zeigler Kyrpides, Nikos C Eloe-Fadrosh, Emiley A |
| author_sort | Roux, Simon |
| collection | PubMed |
| description | We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nbt.4306) contains supplementary material, which is available to authorized users. |
| format | Online Article Text |
| id | pubmed-6871006 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2018 |
| publisher | Nature Publishing Group US |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-68710062019-11-25 Minimum Information about an Uncultivated Virus Genome (MIUViG) Roux, Simon Adriaenssens, Evelien M Dutilh, Bas E Koonin, Eugene V Kropinski, Andrew M Krupovic, Mart Kuhn, Jens H Lavigne, Rob Brister, J Rodney Varsani, Arvind Amid, Clara Aziz, Ramy K Bordenstein, Seth R Bork, Peer Breitbart, Mya Cochrane, Guy R Daly, Rebecca A Desnues, Christelle Duhaime, Melissa B Emerson, Joanne B Enault, François Fuhrman, Jed A Hingamp, Pascal Hugenholtz, Philip Hurwitz, Bonnie L Ivanova, Natalia N Labonté, Jessica M Lee, Kyung-Bum Malmstrom, Rex R Martinez-Garcia, Manuel Mizrachi, Ilene Karsch Ogata, Hiroyuki Páez-Espino, David Petit, Marie-Agnès Putonti, Catherine Rattei, Thomas Reyes, Alejandro Rodriguez-Valera, Francisco Rosario, Karyna Schriml, Lynn Schulz, Frederik Steward, Grieg F Sullivan, Matthew B Sunagawa, Shinichi Suttle, Curtis A Temperton, Ben Tringe, Susannah G Thurber, Rebecca Vega Webster, Nicole S Whiteson, Katrine L Wilhelm, Steven W Wommack, K Eric Woyke, Tanja Wrighton, Kelly C Yilmaz, Pelin Yoshida, Takashi Young, Mark J Yutin, Natalya Allen, Lisa Zeigler Kyrpides, Nikos C Eloe-Fadrosh, Emiley A Nat Biotechnol Article We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere. SUPPLEMENTARY INFORMATION: The online version of this article (doi:10.1038/nbt.4306) contains supplementary material, which is available to authorized users. Nature Publishing Group US 2018-12-17 2019 /pmc/articles/PMC6871006/ /pubmed/30556814 http://dx.doi.org/10.1038/nbt.4306 Text en © The Author(s) 2018 This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) licence. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons licence, users will need to obtain permission from the licence holder to reproduce the material. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ |
| spellingShingle | Article Roux, Simon Adriaenssens, Evelien M Dutilh, Bas E Koonin, Eugene V Kropinski, Andrew M Krupovic, Mart Kuhn, Jens H Lavigne, Rob Brister, J Rodney Varsani, Arvind Amid, Clara Aziz, Ramy K Bordenstein, Seth R Bork, Peer Breitbart, Mya Cochrane, Guy R Daly, Rebecca A Desnues, Christelle Duhaime, Melissa B Emerson, Joanne B Enault, François Fuhrman, Jed A Hingamp, Pascal Hugenholtz, Philip Hurwitz, Bonnie L Ivanova, Natalia N Labonté, Jessica M Lee, Kyung-Bum Malmstrom, Rex R Martinez-Garcia, Manuel Mizrachi, Ilene Karsch Ogata, Hiroyuki Páez-Espino, David Petit, Marie-Agnès Putonti, Catherine Rattei, Thomas Reyes, Alejandro Rodriguez-Valera, Francisco Rosario, Karyna Schriml, Lynn Schulz, Frederik Steward, Grieg F Sullivan, Matthew B Sunagawa, Shinichi Suttle, Curtis A Temperton, Ben Tringe, Susannah G Thurber, Rebecca Vega Webster, Nicole S Whiteson, Katrine L Wilhelm, Steven W Wommack, K Eric Woyke, Tanja Wrighton, Kelly C Yilmaz, Pelin Yoshida, Takashi Young, Mark J Yutin, Natalya Allen, Lisa Zeigler Kyrpides, Nikos C Eloe-Fadrosh, Emiley A Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title | Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title_full | Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title_fullStr | Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title_full_unstemmed | Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title_short | Minimum Information about an Uncultivated Virus Genome (MIUViG) |
| title_sort | minimum information about an uncultivated virus genome (miuvig) |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871006/ https://www.ncbi.nlm.nih.gov/pubmed/30556814 http://dx.doi.org/10.1038/nbt.4306 |
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