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Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs

The set of 55 ancestry informative SNPs (AISNPs) originally developed by the Kidd Lab has been studied on a large number of populations and continues to be applied to new population samples. The existing reference database of population samples allows the relationships of new population samples to b...

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Autores principales: Pakstis, Andrew J., Gurkan, Cemal, Dogan, Mustafa, Balkaya, Hasan Emin, Dogan, Serkan, Neophytou, Pavlos I., Cherni, Lotfi, Boussetta, Sami, Khodjet-El-Khil, Houssein, Ben Ammar ElGaaied, Amel, Salvo, Nina Mjølsnes, Janssen, Kirstin, Olsen, Gunn-Hege, Hadi, Sibte, Almohammed, Eida Khalaf, Pereira, Vania, Truelsen, Ditte Mikkelsen, Bulbul, Ozlem, Soundararajan, Usha, Rajeevan, Haseena, Kidd, Judith R., Kidd, Kenneth K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871633/
https://www.ncbi.nlm.nih.gov/pubmed/31285530
http://dx.doi.org/10.1038/s41431-019-0466-6
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author Pakstis, Andrew J.
Gurkan, Cemal
Dogan, Mustafa
Balkaya, Hasan Emin
Dogan, Serkan
Neophytou, Pavlos I.
Cherni, Lotfi
Boussetta, Sami
Khodjet-El-Khil, Houssein
Ben Ammar ElGaaied, Amel
Salvo, Nina Mjølsnes
Janssen, Kirstin
Olsen, Gunn-Hege
Hadi, Sibte
Almohammed, Eida Khalaf
Pereira, Vania
Truelsen, Ditte Mikkelsen
Bulbul, Ozlem
Soundararajan, Usha
Rajeevan, Haseena
Kidd, Judith R.
Kidd, Kenneth K.
author_facet Pakstis, Andrew J.
Gurkan, Cemal
Dogan, Mustafa
Balkaya, Hasan Emin
Dogan, Serkan
Neophytou, Pavlos I.
Cherni, Lotfi
Boussetta, Sami
Khodjet-El-Khil, Houssein
Ben Ammar ElGaaied, Amel
Salvo, Nina Mjølsnes
Janssen, Kirstin
Olsen, Gunn-Hege
Hadi, Sibte
Almohammed, Eida Khalaf
Pereira, Vania
Truelsen, Ditte Mikkelsen
Bulbul, Ozlem
Soundararajan, Usha
Rajeevan, Haseena
Kidd, Judith R.
Kidd, Kenneth K.
author_sort Pakstis, Andrew J.
collection PubMed
description The set of 55 ancestry informative SNPs (AISNPs) originally developed by the Kidd Lab has been studied on a large number of populations and continues to be applied to new population samples. The existing reference database of population samples allows the relationships of new population samples to be inferred on a global level. Analyses show that these autosomal markers constitute one of the better panels of AISNPs. Continuing to build this reference database enhances its value. Because more than half of the 25 ethnic groups recently studied with these AISNPs are from Southwest Asia and the Mediterranean region, we present here various analyses focused on populations from these regions along with selected reference populations from nearby regions where genotype data are available. Many of these ethnic groups have not been previously studied for forensic markers. Data on populations from other world regions have also been added to the database but are not included in these focused analyses. The new population samples added to ALFRED and FROG-kb increase the total to 164 population samples that have been studied for all 55 AISNPs.
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spelling pubmed-68716332019-11-25 Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs Pakstis, Andrew J. Gurkan, Cemal Dogan, Mustafa Balkaya, Hasan Emin Dogan, Serkan Neophytou, Pavlos I. Cherni, Lotfi Boussetta, Sami Khodjet-El-Khil, Houssein Ben Ammar ElGaaied, Amel Salvo, Nina Mjølsnes Janssen, Kirstin Olsen, Gunn-Hege Hadi, Sibte Almohammed, Eida Khalaf Pereira, Vania Truelsen, Ditte Mikkelsen Bulbul, Ozlem Soundararajan, Usha Rajeevan, Haseena Kidd, Judith R. Kidd, Kenneth K. Eur J Hum Genet Article The set of 55 ancestry informative SNPs (AISNPs) originally developed by the Kidd Lab has been studied on a large number of populations and continues to be applied to new population samples. The existing reference database of population samples allows the relationships of new population samples to be inferred on a global level. Analyses show that these autosomal markers constitute one of the better panels of AISNPs. Continuing to build this reference database enhances its value. Because more than half of the 25 ethnic groups recently studied with these AISNPs are from Southwest Asia and the Mediterranean region, we present here various analyses focused on populations from these regions along with selected reference populations from nearby regions where genotype data are available. Many of these ethnic groups have not been previously studied for forensic markers. Data on populations from other world regions have also been added to the database but are not included in these focused analyses. The new population samples added to ALFRED and FROG-kb increase the total to 164 population samples that have been studied for all 55 AISNPs. Springer International Publishing 2019-07-08 2019-12 /pmc/articles/PMC6871633/ /pubmed/31285530 http://dx.doi.org/10.1038/s41431-019-0466-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Pakstis, Andrew J.
Gurkan, Cemal
Dogan, Mustafa
Balkaya, Hasan Emin
Dogan, Serkan
Neophytou, Pavlos I.
Cherni, Lotfi
Boussetta, Sami
Khodjet-El-Khil, Houssein
Ben Ammar ElGaaied, Amel
Salvo, Nina Mjølsnes
Janssen, Kirstin
Olsen, Gunn-Hege
Hadi, Sibte
Almohammed, Eida Khalaf
Pereira, Vania
Truelsen, Ditte Mikkelsen
Bulbul, Ozlem
Soundararajan, Usha
Rajeevan, Haseena
Kidd, Judith R.
Kidd, Kenneth K.
Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title_full Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title_fullStr Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title_full_unstemmed Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title_short Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
title_sort genetic relationships of european, mediterranean, and sw asian populations using a panel of 55 aisnps
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871633/
https://www.ncbi.nlm.nih.gov/pubmed/31285530
http://dx.doi.org/10.1038/s41431-019-0466-6
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