Cargando…
Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae)
Galeruca daurica (Joannis) has become a new insect pest in the Inner Mongolia grasslands since 2009, and its larvae and eggs have strong cold tolerance. To get a deeper insight into its molecular mechanisms of cold stress responses, we performed de novo transcriptome assembly for G. daurica by RNA-S...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871913/ https://www.ncbi.nlm.nih.gov/pubmed/31752020 http://dx.doi.org/10.1093/jisesa/iez109 |
_version_ | 1783472435877642240 |
---|---|
author | Zhou, Xiao-Rong Shan, Yan-Min Tan, Yao Zhang, Zhuo-Ran Pang, Bao-Ping |
author_facet | Zhou, Xiao-Rong Shan, Yan-Min Tan, Yao Zhang, Zhuo-Ran Pang, Bao-Ping |
author_sort | Zhou, Xiao-Rong |
collection | PubMed |
description | Galeruca daurica (Joannis) has become a new insect pest in the Inner Mongolia grasslands since 2009, and its larvae and eggs have strong cold tolerance. To get a deeper insight into its molecular mechanisms of cold stress responses, we performed de novo transcriptome assembly for G. daurica by RNA-Seq and compared the transcriptomes of its larvae exposed to five different temperature treatments (−10, −5, 0, 5, and 25°C for 1 h and then recovered at 25°C for 1 h), respectively. Compared with the control (25°C), the numbers of differentially expressed genes (DEGs) decreased from 1,821 to 882, with the temperature declining from 5 to −10°C. Moreover, we obtained 323 coregulated DEGs under different low temperatures. Under four low temperatures (−10, −5, 0, and 5°C), a large number of genes were commonly upregulated during recovery from cold stresses, including those related to cuticle protein, followed by cytochrome P450, clock protein, fatty acid synthase, and fatty acyl-CoA reductase; meanwhile, lots of genes encoding cuticle protein, RNA replication protein, RNA-directed DNA polymerase, and glucose dehydrogenase were commonly downregulated. Our findings provide important clues for further investigations of key genes and molecular mechanisms involved in the adaptation of G. daurica to harsh environments. |
format | Online Article Text |
id | pubmed-6871913 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68719132019-11-27 Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) Zhou, Xiao-Rong Shan, Yan-Min Tan, Yao Zhang, Zhuo-Ran Pang, Bao-Ping J Insect Sci Research Galeruca daurica (Joannis) has become a new insect pest in the Inner Mongolia grasslands since 2009, and its larvae and eggs have strong cold tolerance. To get a deeper insight into its molecular mechanisms of cold stress responses, we performed de novo transcriptome assembly for G. daurica by RNA-Seq and compared the transcriptomes of its larvae exposed to five different temperature treatments (−10, −5, 0, 5, and 25°C for 1 h and then recovered at 25°C for 1 h), respectively. Compared with the control (25°C), the numbers of differentially expressed genes (DEGs) decreased from 1,821 to 882, with the temperature declining from 5 to −10°C. Moreover, we obtained 323 coregulated DEGs under different low temperatures. Under four low temperatures (−10, −5, 0, and 5°C), a large number of genes were commonly upregulated during recovery from cold stresses, including those related to cuticle protein, followed by cytochrome P450, clock protein, fatty acid synthase, and fatty acyl-CoA reductase; meanwhile, lots of genes encoding cuticle protein, RNA replication protein, RNA-directed DNA polymerase, and glucose dehydrogenase were commonly downregulated. Our findings provide important clues for further investigations of key genes and molecular mechanisms involved in the adaptation of G. daurica to harsh environments. Oxford University Press 2019-11-21 /pmc/articles/PMC6871913/ /pubmed/31752020 http://dx.doi.org/10.1093/jisesa/iez109 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Entomological Society of America. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Zhou, Xiao-Rong Shan, Yan-Min Tan, Yao Zhang, Zhuo-Ran Pang, Bao-Ping Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title | Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title_full | Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title_fullStr | Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title_full_unstemmed | Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title_short | Comparative Analysis of Transcriptome Responses to Cold Stress in Galeruca daurica (Coleoptera: Chrysomelidae) |
title_sort | comparative analysis of transcriptome responses to cold stress in galeruca daurica (coleoptera: chrysomelidae) |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871913/ https://www.ncbi.nlm.nih.gov/pubmed/31752020 http://dx.doi.org/10.1093/jisesa/iez109 |
work_keys_str_mv | AT zhouxiaorong comparativeanalysisoftranscriptomeresponsestocoldstressingalerucadauricacoleopterachrysomelidae AT shanyanmin comparativeanalysisoftranscriptomeresponsestocoldstressingalerucadauricacoleopterachrysomelidae AT tanyao comparativeanalysisoftranscriptomeresponsestocoldstressingalerucadauricacoleopterachrysomelidae AT zhangzhuoran comparativeanalysisoftranscriptomeresponsestocoldstressingalerucadauricacoleopterachrysomelidae AT pangbaoping comparativeanalysisoftranscriptomeresponsestocoldstressingalerucadauricacoleopterachrysomelidae |