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Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease

OBJECTIVE: Coronary artery disease contributes to noncommunicable disease deaths worldwide. In order to make preventive methods more accurate, we need to know more about the development and progress of this pathology, including the genetic aspects. Humanin is a small peptide known for its cytoprotec...

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Autores principales: Eltermaa, Mall, Jakobson, Maili, Utt, Meeme, Kõks, Sulev, Mägi, Reedik, Starkopf, Joel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873426/
https://www.ncbi.nlm.nih.gov/pubmed/31753007
http://dx.doi.org/10.1186/s13104-019-4807-x
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author Eltermaa, Mall
Jakobson, Maili
Utt, Meeme
Kõks, Sulev
Mägi, Reedik
Starkopf, Joel
author_facet Eltermaa, Mall
Jakobson, Maili
Utt, Meeme
Kõks, Sulev
Mägi, Reedik
Starkopf, Joel
author_sort Eltermaa, Mall
collection PubMed
description OBJECTIVE: Coronary artery disease contributes to noncommunicable disease deaths worldwide. In order to make preventive methods more accurate, we need to know more about the development and progress of this pathology, including the genetic aspects. Humanin is a small peptide known for its cytoprotective and anti-apoptotic properties. Our study looked for genomic associations between humanin-like nuclear isoform genes and coronary artery disease using CARDIoGRAMplusC4D Consortium data. RESULTS: Lookup from meta-analysis datasets gave single nucleotide polymorphisms in all 13 humanin-like nuclear isoform genes with the lowest P value for rs6151662 from the MTRNR2L2 gene including the 50 kb flanking region in both directions (P-value = 0.0037). Within the gene region alone the top variant was rs78083998 from the MTRNR2L13 region (meta-analysis P-value = 0.042). None of the found associations were statistically significant after correction for multiple testing. Lookup for expression trait loci in these gene regions gave no statistically significant variants.
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spelling pubmed-68734262019-12-12 Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease Eltermaa, Mall Jakobson, Maili Utt, Meeme Kõks, Sulev Mägi, Reedik Starkopf, Joel BMC Res Notes Research Note OBJECTIVE: Coronary artery disease contributes to noncommunicable disease deaths worldwide. In order to make preventive methods more accurate, we need to know more about the development and progress of this pathology, including the genetic aspects. Humanin is a small peptide known for its cytoprotective and anti-apoptotic properties. Our study looked for genomic associations between humanin-like nuclear isoform genes and coronary artery disease using CARDIoGRAMplusC4D Consortium data. RESULTS: Lookup from meta-analysis datasets gave single nucleotide polymorphisms in all 13 humanin-like nuclear isoform genes with the lowest P value for rs6151662 from the MTRNR2L2 gene including the 50 kb flanking region in both directions (P-value = 0.0037). Within the gene region alone the top variant was rs78083998 from the MTRNR2L13 region (meta-analysis P-value = 0.042). None of the found associations were statistically significant after correction for multiple testing. Lookup for expression trait loci in these gene regions gave no statistically significant variants. BioMed Central 2019-11-21 /pmc/articles/PMC6873426/ /pubmed/31753007 http://dx.doi.org/10.1186/s13104-019-4807-x Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Eltermaa, Mall
Jakobson, Maili
Utt, Meeme
Kõks, Sulev
Mägi, Reedik
Starkopf, Joel
Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title_full Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title_fullStr Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title_full_unstemmed Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title_short Genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
title_sort genetic variants in humanin nuclear isoform gene regions show no association with coronary artery disease
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873426/
https://www.ncbi.nlm.nih.gov/pubmed/31753007
http://dx.doi.org/10.1186/s13104-019-4807-x
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