STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data

BACKGROUND: Multi-locus sequence typing (MLST) is a standard typing technique used to associate a sequence type (ST) to a bacterial isolate. When the output of whole genome sequencing (WGS) of a sample is available the ST can be assigned directly processing the read-set. Current approaches employ re...

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Detalles Bibliográficos
Autores principales: Dalsass, Mattia, Bodini, Margherita, Lambert, Christophe, Mortier, Marie-Cécile, Romanelli, Marco, Medini, Duccio, Muzzi, Alessandro, Brozzi, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873635/
https://www.ncbi.nlm.nih.gov/pubmed/31757201
http://dx.doi.org/10.1186/s12859-019-2887-1

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