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American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives

The American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) is an international data-sharing consortium focused on enabling advances in precision oncology through the gathering and sharing of tumor genetic sequencing data linked with clinical...

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Autores principales: Micheel, Christine M., Sweeney, Shawn M., LeNoue-Newton, Michele L., André, Fabrice, Bedard, Philippe L., Guinney, Justin, Meijer, Gerrit A., Rollins, Barrett J., Sawyers, Charles L., Schultz, Nikolaus, Shaw, Kenna R. Mills, Velculescu, Victor E., Levy, Mia A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Clinical Oncology 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873906/
https://www.ncbi.nlm.nih.gov/pubmed/30652542
http://dx.doi.org/10.1200/CCI.17.00083
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author Micheel, Christine M.
Sweeney, Shawn M.
LeNoue-Newton, Michele L.
André, Fabrice
Bedard, Philippe L.
Guinney, Justin
Meijer, Gerrit A.
Rollins, Barrett J.
Sawyers, Charles L.
Schultz, Nikolaus
Shaw, Kenna R. Mills
Velculescu, Victor E.
Levy, Mia A.
author_facet Micheel, Christine M.
Sweeney, Shawn M.
LeNoue-Newton, Michele L.
André, Fabrice
Bedard, Philippe L.
Guinney, Justin
Meijer, Gerrit A.
Rollins, Barrett J.
Sawyers, Charles L.
Schultz, Nikolaus
Shaw, Kenna R. Mills
Velculescu, Victor E.
Levy, Mia A.
author_sort Micheel, Christine M.
collection PubMed
description The American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) is an international data-sharing consortium focused on enabling advances in precision oncology through the gathering and sharing of tumor genetic sequencing data linked with clinical data. The project’s history, operational structure, lessons learned, and institutional perspectives on participation in the data-sharing consortium are reviewed. Individuals involved with the inception and execution of AACR Project GENIE from each member institution described their experiences and lessons learned. The consortium was conceived in January 2014 and publicly released its first data set in January 2017, which consisted of 18,804 samples from 18,324 patients contributed by the eight founding institutions. Commitment and contributions from many individuals at AACR and the member institutions were crucial to the consortium’s success. These individuals filled leadership, project management, informatics, data curation, contracts, ethics, and security roles. Many lessons were learned during the first 3 years of the consortium, including on how to gather, harmonize, and share data; how to make decisions and foster collaboration; and how to set the stage for continued participation and expansion of the consortium. We hope that the lessons shared here will assist new GENIE members as well as others who embark on the journey of forming a genomic data–sharing consortium.
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spelling pubmed-68739062019-12-03 American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives Micheel, Christine M. Sweeney, Shawn M. LeNoue-Newton, Michele L. André, Fabrice Bedard, Philippe L. Guinney, Justin Meijer, Gerrit A. Rollins, Barrett J. Sawyers, Charles L. Schultz, Nikolaus Shaw, Kenna R. Mills Velculescu, Victor E. Levy, Mia A. JCO Clin Cancer Inform Review Articles The American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) is an international data-sharing consortium focused on enabling advances in precision oncology through the gathering and sharing of tumor genetic sequencing data linked with clinical data. The project’s history, operational structure, lessons learned, and institutional perspectives on participation in the data-sharing consortium are reviewed. Individuals involved with the inception and execution of AACR Project GENIE from each member institution described their experiences and lessons learned. The consortium was conceived in January 2014 and publicly released its first data set in January 2017, which consisted of 18,804 samples from 18,324 patients contributed by the eight founding institutions. Commitment and contributions from many individuals at AACR and the member institutions were crucial to the consortium’s success. These individuals filled leadership, project management, informatics, data curation, contracts, ethics, and security roles. Many lessons were learned during the first 3 years of the consortium, including on how to gather, harmonize, and share data; how to make decisions and foster collaboration; and how to set the stage for continued participation and expansion of the consortium. We hope that the lessons shared here will assist new GENIE members as well as others who embark on the journey of forming a genomic data–sharing consortium. American Society of Clinical Oncology 2018-02-16 /pmc/articles/PMC6873906/ /pubmed/30652542 http://dx.doi.org/10.1200/CCI.17.00083 Text en © 2018 by American Society of Clinical Oncology http://creativecommons.org/licenses/by/4.0/ Licensed under the Creative Commons Attribution 4.0 License: http://creativecommons.org/licenses/by/4.0/
spellingShingle Review Articles
Micheel, Christine M.
Sweeney, Shawn M.
LeNoue-Newton, Michele L.
André, Fabrice
Bedard, Philippe L.
Guinney, Justin
Meijer, Gerrit A.
Rollins, Barrett J.
Sawyers, Charles L.
Schultz, Nikolaus
Shaw, Kenna R. Mills
Velculescu, Victor E.
Levy, Mia A.
American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title_full American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title_fullStr American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title_full_unstemmed American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title_short American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond—Lessons Learned and Member Institutions’ Perspectives
title_sort american association for cancer research project genomics evidence neoplasia information exchange: from inception to first data release and beyond—lessons learned and member institutions’ perspectives
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873906/
https://www.ncbi.nlm.nih.gov/pubmed/30652542
http://dx.doi.org/10.1200/CCI.17.00083
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