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A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

PURPOSE: Docetaxel has a demonstrated survival benefit for patients with metastatic castration-resistant prostate cancer (mCRPC); however, 10% to 20% of patients discontinue docetaxel prematurely because of toxicity-induced adverse events, and the management of risk factors for toxicity remains a ch...

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Autores principales: Seyednasrollah, Fatemeh, Koestler, Devin C., Wang, Tao, Piccolo, Stephen R., Vega, Roberto, Greiner, Russell, Fuchs, Christiane, Gofer, Eyal, Kumar, Luke, Wolfinger, Russell D., Kanigel Winner, Kimberly, Bare, Chris, Neto, Elias Chaibub, Yu, Thomas, Shen, Liji, Abdallah, Kald, Norman, Thea, Stolovitzky, Gustavo, Soule, Howard R., Sweeney, Christopher J., Ryan, Charles J., Scher, Howard I., Sartor, Oliver, Elo, Laura L., Zhou, Fang Liz, Guinney, Justin, Costello, James C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Clinical Oncology 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874023/
https://www.ncbi.nlm.nih.gov/pubmed/30657384
http://dx.doi.org/10.1200/CCI.17.00018
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author Seyednasrollah, Fatemeh
Koestler, Devin C.
Wang, Tao
Piccolo, Stephen R.
Vega, Roberto
Greiner, Russell
Fuchs, Christiane
Gofer, Eyal
Kumar, Luke
Wolfinger, Russell D.
Kanigel Winner, Kimberly
Bare, Chris
Neto, Elias Chaibub
Yu, Thomas
Shen, Liji
Abdallah, Kald
Norman, Thea
Stolovitzky, Gustavo
Soule, Howard R.
Sweeney, Christopher J.
Ryan, Charles J.
Scher, Howard I.
Sartor, Oliver
Elo, Laura L.
Zhou, Fang Liz
Guinney, Justin
Costello, James C.
author_facet Seyednasrollah, Fatemeh
Koestler, Devin C.
Wang, Tao
Piccolo, Stephen R.
Vega, Roberto
Greiner, Russell
Fuchs, Christiane
Gofer, Eyal
Kumar, Luke
Wolfinger, Russell D.
Kanigel Winner, Kimberly
Bare, Chris
Neto, Elias Chaibub
Yu, Thomas
Shen, Liji
Abdallah, Kald
Norman, Thea
Stolovitzky, Gustavo
Soule, Howard R.
Sweeney, Christopher J.
Ryan, Charles J.
Scher, Howard I.
Sartor, Oliver
Elo, Laura L.
Zhou, Fang Liz
Guinney, Justin
Costello, James C.
author_sort Seyednasrollah, Fatemeh
collection PubMed
description PURPOSE: Docetaxel has a demonstrated survival benefit for patients with metastatic castration-resistant prostate cancer (mCRPC); however, 10% to 20% of patients discontinue docetaxel prematurely because of toxicity-induced adverse events, and the management of risk factors for toxicity remains a challenge. PATIENTS AND METHODS: The comparator arms of four phase III clinical trials in first-line mCRPC were collected, annotated, and compiled, with a total of 2,070 patients. Early discontinuation was defined as treatment stoppage within 3 months as a result of adverse treatment effects; 10% of patients discontinued treatment. We designed an open-data, crowd-sourced DREAM Challenge for developing models with which to predict early discontinuation of docetaxel treatment. Clinical features for all four trials and outcomes for three of the four trials were made publicly available, with the outcomes of the fourth trial held back for unbiased model evaluation. Challenge participants from around the world trained models and submitted their predictions. Area under the precision-recall curve was the primary metric used for performance assessment. RESULTS: In total, 34 separate teams submitted predictions. Seven models with statistically similar area under precision-recall curves (Bayes factor ≤ 3) outperformed all other models. A postchallenge analysis of risk prediction using these seven models revealed three patient subgroups: high risk, low risk, or discordant risk. Early discontinuation events were two times higher in the high-risk subgroup compared with the low-risk subgroup. Simulation studies demonstrated that use of patient discontinuation prediction models could reduce patient enrollment in clinical trials without the loss of statistical power. CONCLUSION: This work represents a successful collaboration between 34 international teams that leveraged open clinical trial data. Our results demonstrate that routinely collected clinical features can be used to identify patients with mCRPC who are likely to discontinue treatment because of adverse events and establishes a robust benchmark with implications for clinical trial design.
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spelling pubmed-68740232019-12-03 A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer Seyednasrollah, Fatemeh Koestler, Devin C. Wang, Tao Piccolo, Stephen R. Vega, Roberto Greiner, Russell Fuchs, Christiane Gofer, Eyal Kumar, Luke Wolfinger, Russell D. Kanigel Winner, Kimberly Bare, Chris Neto, Elias Chaibub Yu, Thomas Shen, Liji Abdallah, Kald Norman, Thea Stolovitzky, Gustavo Soule, Howard R. Sweeney, Christopher J. Ryan, Charles J. Scher, Howard I. Sartor, Oliver Elo, Laura L. Zhou, Fang Liz Guinney, Justin Costello, James C. JCO Clin Cancer Inform Original Reports PURPOSE: Docetaxel has a demonstrated survival benefit for patients with metastatic castration-resistant prostate cancer (mCRPC); however, 10% to 20% of patients discontinue docetaxel prematurely because of toxicity-induced adverse events, and the management of risk factors for toxicity remains a challenge. PATIENTS AND METHODS: The comparator arms of four phase III clinical trials in first-line mCRPC were collected, annotated, and compiled, with a total of 2,070 patients. Early discontinuation was defined as treatment stoppage within 3 months as a result of adverse treatment effects; 10% of patients discontinued treatment. We designed an open-data, crowd-sourced DREAM Challenge for developing models with which to predict early discontinuation of docetaxel treatment. Clinical features for all four trials and outcomes for three of the four trials were made publicly available, with the outcomes of the fourth trial held back for unbiased model evaluation. Challenge participants from around the world trained models and submitted their predictions. Area under the precision-recall curve was the primary metric used for performance assessment. RESULTS: In total, 34 separate teams submitted predictions. Seven models with statistically similar area under precision-recall curves (Bayes factor ≤ 3) outperformed all other models. A postchallenge analysis of risk prediction using these seven models revealed three patient subgroups: high risk, low risk, or discordant risk. Early discontinuation events were two times higher in the high-risk subgroup compared with the low-risk subgroup. Simulation studies demonstrated that use of patient discontinuation prediction models could reduce patient enrollment in clinical trials without the loss of statistical power. CONCLUSION: This work represents a successful collaboration between 34 international teams that leveraged open clinical trial data. Our results demonstrate that routinely collected clinical features can be used to identify patients with mCRPC who are likely to discontinue treatment because of adverse events and establishes a robust benchmark with implications for clinical trial design. American Society of Clinical Oncology 2017-08-04 /pmc/articles/PMC6874023/ /pubmed/30657384 http://dx.doi.org/10.1200/CCI.17.00018 Text en Published by American Society of Clinical Oncology http://creativecommons.org/licenses/by/4.0/ Licensed under the Creative Commons Attribution 4.0 License: http://creativecommons.org/licenses/by/4.0/
spellingShingle Original Reports
Seyednasrollah, Fatemeh
Koestler, Devin C.
Wang, Tao
Piccolo, Stephen R.
Vega, Roberto
Greiner, Russell
Fuchs, Christiane
Gofer, Eyal
Kumar, Luke
Wolfinger, Russell D.
Kanigel Winner, Kimberly
Bare, Chris
Neto, Elias Chaibub
Yu, Thomas
Shen, Liji
Abdallah, Kald
Norman, Thea
Stolovitzky, Gustavo
Soule, Howard R.
Sweeney, Christopher J.
Ryan, Charles J.
Scher, Howard I.
Sartor, Oliver
Elo, Laura L.
Zhou, Fang Liz
Guinney, Justin
Costello, James C.
A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title_full A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title_fullStr A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title_full_unstemmed A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title_short A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer
title_sort dream challenge to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer
topic Original Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874023/
https://www.ncbi.nlm.nih.gov/pubmed/30657384
http://dx.doi.org/10.1200/CCI.17.00018
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