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Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer
The aim of this work was to investigate radiomic analysis of contrast and non-contrast enhanced planning CT images of oesophageal cancer (OC) patients in terms of stability, dimensionality and contrast agent dependency. The prognostic significance of CT-based radiomic features was also evaluated. Di...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874382/ https://www.ncbi.nlm.nih.gov/pubmed/31756181 http://dx.doi.org/10.1371/journal.pone.0225550 |
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author | Piazzese, Concetta Foley, Kieran Whybra, Philip Hurt, Chris Crosby, Tom Spezi, Emiliano |
author_facet | Piazzese, Concetta Foley, Kieran Whybra, Philip Hurt, Chris Crosby, Tom Spezi, Emiliano |
author_sort | Piazzese, Concetta |
collection | PubMed |
description | The aim of this work was to investigate radiomic analysis of contrast and non-contrast enhanced planning CT images of oesophageal cancer (OC) patients in terms of stability, dimensionality and contrast agent dependency. The prognostic significance of CT-based radiomic features was also evaluated. Different 2D and 3D radiomic features were extracted from contrast and non-contrast enhanced CT images of 213 patients from the multi-centre SCOPE1 randomised controlled trial (RCT) in OC. Feature stability was evaluated by randomly dividing patients into three groups and identifying textures with similar distributions among groups with a Kruskal-Wallis analysis. A paired two-sided Wilcoxon signed rank test was used to assess for significant differences in the remaining corresponding 2D and 3D stable features. A prognostic model was constructed using clinical characteristics and remaining filtered features. The discriminative ability of significant variables was tested using Kaplan-Meier analysis. A total of 238 2D and 3D radiomic features were computed from oesophageal CT images. More than 75 features were stable if extracted from homogeneous cohort (contrast or non-contrast enhanced CT images) and inhomogeneous cohort (contrast and non-contrast enhanced CT images). Among the remaining corresponding stable features computed from both cohorts, only 4 features did not show a statistically significant difference if obtained in 2D or in 3D (p-value < 0.05). A Cox regression model constructed using 5 clinical variables (age, sex, tumour, node and metastasis (TNM) stage, WHO performance status and contrast administration) and 4 radiomic variables (inverse variance(GLCM), large distance emphasis(GLDZM), zone distance non uniformity norm(GLDZM), zone distance variance(GLDZM)), identified one radiomic feature (zone distance variance(GLDZM)) that was significantly associated with overall survival (p-value = 0.032, HR = 1.25, 95% CI = 1.02–1.52). A significant difference in overall survival between groups was found when considering a threshold of zone distance variance(GLDZM) equals to 1.70 (X(2) = 7.692, df = 1, p-value = 0.006). Zone distance variance(GLDZM) was identified as the only stable CT radiomic feature statistically correlated with overall survival, independent of dimensionality and contrast administration. This feature was able to identify high-risk patients and if validated, could be the subject of a future clinical trial aiming to improve clinical decision making and personalise OC treatment. |
format | Online Article Text |
id | pubmed-6874382 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-68743822019-12-06 Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer Piazzese, Concetta Foley, Kieran Whybra, Philip Hurt, Chris Crosby, Tom Spezi, Emiliano PLoS One Research Article The aim of this work was to investigate radiomic analysis of contrast and non-contrast enhanced planning CT images of oesophageal cancer (OC) patients in terms of stability, dimensionality and contrast agent dependency. The prognostic significance of CT-based radiomic features was also evaluated. Different 2D and 3D radiomic features were extracted from contrast and non-contrast enhanced CT images of 213 patients from the multi-centre SCOPE1 randomised controlled trial (RCT) in OC. Feature stability was evaluated by randomly dividing patients into three groups and identifying textures with similar distributions among groups with a Kruskal-Wallis analysis. A paired two-sided Wilcoxon signed rank test was used to assess for significant differences in the remaining corresponding 2D and 3D stable features. A prognostic model was constructed using clinical characteristics and remaining filtered features. The discriminative ability of significant variables was tested using Kaplan-Meier analysis. A total of 238 2D and 3D radiomic features were computed from oesophageal CT images. More than 75 features were stable if extracted from homogeneous cohort (contrast or non-contrast enhanced CT images) and inhomogeneous cohort (contrast and non-contrast enhanced CT images). Among the remaining corresponding stable features computed from both cohorts, only 4 features did not show a statistically significant difference if obtained in 2D or in 3D (p-value < 0.05). A Cox regression model constructed using 5 clinical variables (age, sex, tumour, node and metastasis (TNM) stage, WHO performance status and contrast administration) and 4 radiomic variables (inverse variance(GLCM), large distance emphasis(GLDZM), zone distance non uniformity norm(GLDZM), zone distance variance(GLDZM)), identified one radiomic feature (zone distance variance(GLDZM)) that was significantly associated with overall survival (p-value = 0.032, HR = 1.25, 95% CI = 1.02–1.52). A significant difference in overall survival between groups was found when considering a threshold of zone distance variance(GLDZM) equals to 1.70 (X(2) = 7.692, df = 1, p-value = 0.006). Zone distance variance(GLDZM) was identified as the only stable CT radiomic feature statistically correlated with overall survival, independent of dimensionality and contrast administration. This feature was able to identify high-risk patients and if validated, could be the subject of a future clinical trial aiming to improve clinical decision making and personalise OC treatment. Public Library of Science 2019-11-22 /pmc/articles/PMC6874382/ /pubmed/31756181 http://dx.doi.org/10.1371/journal.pone.0225550 Text en © 2019 Piazzese et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Piazzese, Concetta Foley, Kieran Whybra, Philip Hurt, Chris Crosby, Tom Spezi, Emiliano Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title | Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title_full | Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title_fullStr | Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title_full_unstemmed | Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title_short | Discovery of stable and prognostic CT-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
title_sort | discovery of stable and prognostic ct-based radiomic features independent of contrast administration and dimensionality in oesophageal cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874382/ https://www.ncbi.nlm.nih.gov/pubmed/31756181 http://dx.doi.org/10.1371/journal.pone.0225550 |
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