Cargando…

First-tier detection of intragenomic 16S rRNA gene variation in culturable endophytic bacteria from cacao seeds

BACKGROUND: Intragenomic variability in 16S rDNA is a limiting factor for taxonomic and diversity characterization of Bacteria, and studies on its occurrence in natural/environmental populations are scarce. In this work, direct DNA amplicon sequencing coupled with frequent-cutter restriction analysi...

Descripción completa

Detalles Bibliográficos
Autores principales:	da Silva, Cleiziane Bispo, dos Santos, Hellen Ribeiro Martins, Marbach, Phellippe Arthur Santos, de Souza, Jorge Teodoro, Cruz-Magalhães, Valter, Argôlo-Filho, Ronaldo Costa, Loguercio, Leandro Lopes
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2019
Materias:	Biodiversity
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874854/ https://www.ncbi.nlm.nih.gov/pubmed/31768299 http://dx.doi.org/10.7717/peerj.7452

Ejemplares similares

Characterization of genetic diversity on tropical Trichoderma germplasm by sequencing of rRNA internal transcribed spacers
por: Feitosa, Yara Barros, et al.
Publicado: (2019)

A 16S rDNA PCR-based theoretical to actual delta approach on culturable mock communities revealed severe losses of diversity information
por: dos Santos, Hellen Ribeiro Martins, et al.
Publicado: (2019)

High-Quality Draft Genome Sequence of Bacillus amyloliquefaciens Strain 629, an Endophyte from Theobroma cacao
por: SantAnna, Brena M. M., et al.
Publicado: (2015)

Bacillus thuringiensis Is an Environmental Pathogen and Host-Specificity Has Developed as an Adaptation to Human-Generated Ecological Niches
por: Argôlo-Filho, Ronaldo Costa, et al.
Publicado: (2013)

How conserved are the conserved 16S-rRNA regions?
por: Martinez-Porchas, Marcel, et al.
Publicado: (2017)

The morphoanatomy of Serjania erecta Radlk (Sapindaceae) provides evidence of biotrophic interactions by endophytic fungi within leaves
por: de Freitas, Samylla Tássia Ferreira, et al.
Publicado: (2023)

A new alkalophilic isolate of Bacillus as a producer of cyclodextrin glycosyltransferase using cassava flour
por: de Araújo Coelho, Sheila Lorena, et al.
Publicado: (2016)

Varying strength of selection contributes to the intragenomic diversity of rRNA genes
por: Sultanov, Daniel, et al.
Publicado: (2022)

Double lives: transfer of fungal endophytes from leaves to woody substrates
por: Nelson, Aaron, et al.
Publicado: (2020)

Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes
por: Verstraete, Brecht, et al.
Publicado: (2023)

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
por: Schloss, Patrick D., et al.
Publicado: (2016)

Diversity of the gut microbiome in three grasshopper species using 16S rRNA and determination of cellulose digestibility
por: Wang, Jian-Mei, et al.
Publicado: (2020)

DNA metabarcoding of zooplankton communities: species diversity and seasonal variation revealed by 18S rRNA and COI
por: Zhao, Lina, et al.
Publicado: (2021)

Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
por: Cheng, Dandan, et al.
Publicado: (2019)

Detection of bacterial endosymbionts in freshwater crustaceans: the applicability of non-degenerate primers to amplify the bacterial 16S rRNA gene
por: Mioduchowska, Monika, et al.
Publicado: (2018)

Long-term storage of feces at −80 °C versus −20 °C is negligible for 16S rRNA amplicon profiling of the equine bacterial microbiome
por: Gavriliuc, Stefan, et al.
Publicado: (2021)

Production and Partial Characterization of Cellulases from Trichoderma sp. IS-05 Isolated from Sandy Coastal Plains of Northeast Brazil
por: Andrade, Jackeline Pereira, et al.
Publicado: (2011)

Integrative species delimitation helps to find the hidden diversity of the leaf-litter frog Ischnocnema manezinho (Garcia, 1996) (Anura, Brachycephalidae), endemic to the southern Atlantic Forest
por: Oswald, Caroline Batistim, et al.
Publicado: (2023)

Isolation, diversity, and antimicrobial activity of fungal endophytes from Rohdea chinensis (Baker) N.Tanaka (synonym Tupistra chinensis Baker) of Qinling Mountains, China
por: An, Chao, et al.
Publicado: (2020)

Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts
por: Hui, Min, et al.
Publicado: (2022)

Habitat loss estimation for assessing terrestrial mammalian species extinction risk: an open data framework
por: Butti, Mariella, et al.
Publicado: (2022)

Morphological and molecular analyses of a Meloidogyne mali population with high intragenomic rRNA polymorphism
por: Gu, Jianfeng, et al.
Publicado: (2020)

Morphological, Physiological, and Taxonomic Characterization of Actinobacterial Isolates Living as Endophytes of Cacao Pods and Cacao Seeds
por: Tchinda, Romaric Armel Mouafo, et al.
Publicado: (2016)

Changes in leaf chlorophyll content associated with flowering and its role in the diversity of phytophagous insects in a tree species from a semiarid Caatinga
por: Sousa-Souto, Leandro, et al.
Publicado: (2018)

Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil
por: Moreira, Ana Paula B., et al.
Publicado: (2014)

Diversity of endophytic fungal community of cacao (Theobroma cacao L.) and biological control of Crinipellis perniciosa, causal agent of Witches' Broom Disease
por: Rubini, Marciano R., et al.
Publicado: (2005)

Effect of Intragenomic Sequence Heterogeneity among Multiple 16S rRNA Genes on Species Identification of Elizabethkingia
por: Lin, Jiun-Nong, et al.
Publicado: (2022)

Neospongodes atlantica, a potential case of an early biological introduction in the Southwestern Atlantic
por: Cordeiro, Ralf T.S., et al.
Publicado: (2022)

Different Ways of Doing the Same: Variations in the Two Last Steps of the Purine Biosynthetic Pathway in Prokaryotes
por: Costa Brandão Cruz, Dennifier, et al.
Publicado: (2019)

Diversity and ecological structure of vibrios in benthic and pelagic habitats along a latitudinal gradient in the Southwest Atlantic Ocean
por: Chimetto Tonon, Luciane A., et al.
Publicado: (2015)

The secret life of deep-sea shrimps: ecological and evolutionary clues from the larval description of Systellaspis debilis (Caridea: Oplophoridae)
por: Bartilotti, Cátia, et al.
Publicado: (2019)

Metacommunity patterns of Amazonian Odonata: the role of environmental gradients and major rivers
por: Alves-Martins, Fernanda, et al.
Publicado: (2019)

Local-scale models reveal ecological niche variability in amphibian and reptile communities from two contrasting biogeographic regions
por: Muñoz, Alberto, et al.
Publicado: (2016)

Three new species of Byrsopteryx Flint microcaddisflies from Peru (Insecta: Trichoptera) including DNA-based larval associations
por: Santos, Allan P.M., et al.
Publicado: (2021)

Genetic variation and cryptic lineage among the sergestid shrimp Acetes americanus (Decapoda)
por: Morilhas Simões, Sabrina, et al.
Publicado: (2023)

Broad-scale sampling of primary freshwater fish populations reveals the role of intrinsic traits, inter-basin connectivity, drainage area and latitude on shaping contemporary patterns of genetic diversity
por: Sousa-Santos, Carla, et al.
Publicado: (2016)

Does ecophysiology mediate reptile responses to fire regimes? Evidence from Iberian lizards
por: Ferreira, Catarina C., et al.
Publicado: (2016)

Zooplankton biodiversity and temporal dynamics (2005–2015) in a coastal station in western Portugal (Northeastern Atlantic Ocean)
por: Dos Santos, Antonina, et al.
Publicado: (2023)

Portanini (Insecta: Hemiptera: Cicadellidae) from Peru: checklist with new records and descriptions of two new species
por: Santos Prando, Jádila, et al.
Publicado: (2020)

Integrative taxonomy of Metrichia Ross (Trichoptera: Hydroptilidae: Ochrotrichiinae) microcaddisflies from Brazil: descriptions of twenty new species
por: Santos, Allan P.M., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_0k2ltb88a9istq61molpkijs6a