Cargando…

Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea

PURPOSE: Oak is the dominant tree species in Korea. Oak pollen has the highest sensitivity rate among all allergenic tree species in Korea. A deep neural network (DNN)-based estimation model was developed to determine the concentration of oak pollen and overcome the shortcomings of conventional regr...

Descripción completa

Detalles Bibliográficos
Autores principales: Seo, Yun Am, Kim, Kyu Rang, Cho, Changbum, Oh, Jae-Won, Kim, Tae Hee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Academy of Asthma, Allergy and Clinical Immunology; The Korean Academy of Pediatric Allergy and Respiratory Disease 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875477/
https://www.ncbi.nlm.nih.gov/pubmed/31743971
http://dx.doi.org/10.4168/aair.2020.12.1.149
_version_ 1783473039835398144
author Seo, Yun Am
Kim, Kyu Rang
Cho, Changbum
Oh, Jae-Won
Kim, Tae Hee
author_facet Seo, Yun Am
Kim, Kyu Rang
Cho, Changbum
Oh, Jae-Won
Kim, Tae Hee
author_sort Seo, Yun Am
collection PubMed
description PURPOSE: Oak is the dominant tree species in Korea. Oak pollen has the highest sensitivity rate among all allergenic tree species in Korea. A deep neural network (DNN)-based estimation model was developed to determine the concentration of oak pollen and overcome the shortcomings of conventional regression models. METHODS: The DNN model proposed in this study utilized weather factors as the input and provided pollen concentrations as the output. Weather and pollen concentration data were used from 2007 to 2016 obtained from the Korea Meteorological Administration pollen observation network. Because it is difficult to prevent over-fitting and underestimation by using a DNN model alone, we developed a bootstrap aggregating-type ensemble model. Each of the 30 ensemble members was trained with random sampling at a fixed rate according to the pollen risk grade. To verify the effectiveness of the proposed model, we compared its performance with those of models of regression and support vector regression (SVR) under the same conditions, with respect to the prediction of pollen concentrations, risk levels, and season length. RESULTS: The mean absolute percentage error in the estimated pollen concentrations was 11.18%, 10.37%, and 5.04% for the regression, SVR and DNN models, respectively. The start of the pollen season was estimated to be 20, 22, and 6 days earlier than that predicted by the regression, SVR and DNN models, respectively. Similarly, the end of the pollen season was estimated to be 33, 20, and 9 days later that predicted by the regression, SVR and DNN models, respectively. CONCLUSIONS: Overall, the DNN model performed better than the other models. However, the prediction of peak pollen concentrations needs improvement. Improved observation quality with optimization of the DNN model will resolve this issue.
format Online
Article
Text
id pubmed-6875477
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher The Korean Academy of Asthma, Allergy and Clinical Immunology; The Korean Academy of Pediatric Allergy and Respiratory Disease
record_format MEDLINE/PubMed
spelling pubmed-68754772020-01-01 Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea Seo, Yun Am Kim, Kyu Rang Cho, Changbum Oh, Jae-Won Kim, Tae Hee Allergy Asthma Immunol Res Original Article PURPOSE: Oak is the dominant tree species in Korea. Oak pollen has the highest sensitivity rate among all allergenic tree species in Korea. A deep neural network (DNN)-based estimation model was developed to determine the concentration of oak pollen and overcome the shortcomings of conventional regression models. METHODS: The DNN model proposed in this study utilized weather factors as the input and provided pollen concentrations as the output. Weather and pollen concentration data were used from 2007 to 2016 obtained from the Korea Meteorological Administration pollen observation network. Because it is difficult to prevent over-fitting and underestimation by using a DNN model alone, we developed a bootstrap aggregating-type ensemble model. Each of the 30 ensemble members was trained with random sampling at a fixed rate according to the pollen risk grade. To verify the effectiveness of the proposed model, we compared its performance with those of models of regression and support vector regression (SVR) under the same conditions, with respect to the prediction of pollen concentrations, risk levels, and season length. RESULTS: The mean absolute percentage error in the estimated pollen concentrations was 11.18%, 10.37%, and 5.04% for the regression, SVR and DNN models, respectively. The start of the pollen season was estimated to be 20, 22, and 6 days earlier than that predicted by the regression, SVR and DNN models, respectively. Similarly, the end of the pollen season was estimated to be 33, 20, and 9 days later that predicted by the regression, SVR and DNN models, respectively. CONCLUSIONS: Overall, the DNN model performed better than the other models. However, the prediction of peak pollen concentrations needs improvement. Improved observation quality with optimization of the DNN model will resolve this issue. The Korean Academy of Asthma, Allergy and Clinical Immunology; The Korean Academy of Pediatric Allergy and Respiratory Disease 2019-10-07 /pmc/articles/PMC6875477/ /pubmed/31743971 http://dx.doi.org/10.4168/aair.2020.12.1.149 Text en Copyright © 2020 The Korean Academy of Asthma, Allergy and Clinical Immunology • The Korean Academy of Pediatric Allergy and Respiratory Disease https://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Seo, Yun Am
Kim, Kyu Rang
Cho, Changbum
Oh, Jae-Won
Kim, Tae Hee
Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title_full Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title_fullStr Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title_full_unstemmed Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title_short Deep Neural Network-Based Concentration Model for Oak Pollen Allergy Warning in South Korea
title_sort deep neural network-based concentration model for oak pollen allergy warning in south korea
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875477/
https://www.ncbi.nlm.nih.gov/pubmed/31743971
http://dx.doi.org/10.4168/aair.2020.12.1.149
work_keys_str_mv AT seoyunam deepneuralnetworkbasedconcentrationmodelforoakpollenallergywarninginsouthkorea
AT kimkyurang deepneuralnetworkbasedconcentrationmodelforoakpollenallergywarninginsouthkorea
AT chochangbum deepneuralnetworkbasedconcentrationmodelforoakpollenallergywarninginsouthkorea
AT ohjaewon deepneuralnetworkbasedconcentrationmodelforoakpollenallergywarninginsouthkorea
AT kimtaehee deepneuralnetworkbasedconcentrationmodelforoakpollenallergywarninginsouthkorea