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Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts

Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and...

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Autores principales: Smart, Simon M., Jarvis, Susan G., Mizunuma, Toshie, Herrero‐Jáuregui, Cristina, Fang, Zhou, Butler, Adam, Alison, Jamie, Wilson, Mike, Marrs, Robert H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875586/
https://www.ncbi.nlm.nih.gov/pubmed/31788220
http://dx.doi.org/10.1002/ece3.5766
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author Smart, Simon M.
Jarvis, Susan G.
Mizunuma, Toshie
Herrero‐Jáuregui, Cristina
Fang, Zhou
Butler, Adam
Alison, Jamie
Wilson, Mike
Marrs, Robert H.
author_facet Smart, Simon M.
Jarvis, Susan G.
Mizunuma, Toshie
Herrero‐Jáuregui, Cristina
Fang, Zhou
Butler, Adam
Alison, Jamie
Wilson, Mike
Marrs, Robert H.
author_sort Smart, Simon M.
collection PubMed
description Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and bryophyte flora. Key outcomes were (a) scored assessments of each modeled species and niche axis combination, (b) guidance on models needing further development, (c) exploration of the trade‐off between presenting more complex model summaries, which could lead to more thorough validation, versus the longer time these take to evaluate, (d) quantification of the internal consistency of expert opinion based on comparison of assessment scores made on a random subset of models evaluated by both experts. Overall, the experts assessed 39% of species and niche axis combinations to be “poor” and 61% to show a degree of reliability split between “moderate” (30%), “good” (25%), and “excellent” (6%). The two experts agreed in only 43% of cases, reaching greater consensus about poorer models and disagreeing most about models rated as better by either expert. This low agreement rate suggests that a greater number of experts is required to produce reliable assessments and to more fully understand the reasons underlying lack of consensus. While area under curve (AUC) statistics showed generally very good ability of the models to predict random hold‐out samples of the data, there was no correspondence between these and the scores given by the experts and no apparent correlation between AUC and species prevalence. Crowd‐sourcing further assessments by allowing web‐based access to model fits is an obvious next step. To this end, we developed an online application for inspecting and evaluating the fit of each niche surface to its training data.
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spelling pubmed-68755862019-11-29 Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts Smart, Simon M. Jarvis, Susan G. Mizunuma, Toshie Herrero‐Jáuregui, Cristina Fang, Zhou Butler, Adam Alison, Jamie Wilson, Mike Marrs, Robert H. Ecol Evol Original Research Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and bryophyte flora. Key outcomes were (a) scored assessments of each modeled species and niche axis combination, (b) guidance on models needing further development, (c) exploration of the trade‐off between presenting more complex model summaries, which could lead to more thorough validation, versus the longer time these take to evaluate, (d) quantification of the internal consistency of expert opinion based on comparison of assessment scores made on a random subset of models evaluated by both experts. Overall, the experts assessed 39% of species and niche axis combinations to be “poor” and 61% to show a degree of reliability split between “moderate” (30%), “good” (25%), and “excellent” (6%). The two experts agreed in only 43% of cases, reaching greater consensus about poorer models and disagreeing most about models rated as better by either expert. This low agreement rate suggests that a greater number of experts is required to produce reliable assessments and to more fully understand the reasons underlying lack of consensus. While area under curve (AUC) statistics showed generally very good ability of the models to predict random hold‐out samples of the data, there was no correspondence between these and the scores given by the experts and no apparent correlation between AUC and species prevalence. Crowd‐sourcing further assessments by allowing web‐based access to model fits is an obvious next step. To this end, we developed an online application for inspecting and evaluating the fit of each niche surface to its training data. John Wiley and Sons Inc. 2019-10-25 /pmc/articles/PMC6875586/ /pubmed/31788220 http://dx.doi.org/10.1002/ece3.5766 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Smart, Simon M.
Jarvis, Susan G.
Mizunuma, Toshie
Herrero‐Jáuregui, Cristina
Fang, Zhou
Butler, Adam
Alison, Jamie
Wilson, Mike
Marrs, Robert H.
Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title_full Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title_fullStr Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title_full_unstemmed Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title_short Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
title_sort assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875586/
https://www.ncbi.nlm.nih.gov/pubmed/31788220
http://dx.doi.org/10.1002/ece3.5766
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