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Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts
Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875586/ https://www.ncbi.nlm.nih.gov/pubmed/31788220 http://dx.doi.org/10.1002/ece3.5766 |
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author | Smart, Simon M. Jarvis, Susan G. Mizunuma, Toshie Herrero‐Jáuregui, Cristina Fang, Zhou Butler, Adam Alison, Jamie Wilson, Mike Marrs, Robert H. |
author_facet | Smart, Simon M. Jarvis, Susan G. Mizunuma, Toshie Herrero‐Jáuregui, Cristina Fang, Zhou Butler, Adam Alison, Jamie Wilson, Mike Marrs, Robert H. |
author_sort | Smart, Simon M. |
collection | PubMed |
description | Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and bryophyte flora. Key outcomes were (a) scored assessments of each modeled species and niche axis combination, (b) guidance on models needing further development, (c) exploration of the trade‐off between presenting more complex model summaries, which could lead to more thorough validation, versus the longer time these take to evaluate, (d) quantification of the internal consistency of expert opinion based on comparison of assessment scores made on a random subset of models evaluated by both experts. Overall, the experts assessed 39% of species and niche axis combinations to be “poor” and 61% to show a degree of reliability split between “moderate” (30%), “good” (25%), and “excellent” (6%). The two experts agreed in only 43% of cases, reaching greater consensus about poorer models and disagreeing most about models rated as better by either expert. This low agreement rate suggests that a greater number of experts is required to produce reliable assessments and to more fully understand the reasons underlying lack of consensus. While area under curve (AUC) statistics showed generally very good ability of the models to predict random hold‐out samples of the data, there was no correspondence between these and the scores given by the experts and no apparent correlation between AUC and species prevalence. Crowd‐sourcing further assessments by allowing web‐based access to model fits is an obvious next step. To this end, we developed an online application for inspecting and evaluating the fit of each niche surface to its training data. |
format | Online Article Text |
id | pubmed-6875586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68755862019-11-29 Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts Smart, Simon M. Jarvis, Susan G. Mizunuma, Toshie Herrero‐Jáuregui, Cristina Fang, Zhou Butler, Adam Alison, Jamie Wilson, Mike Marrs, Robert H. Ecol Evol Original Research Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and bryophyte flora. Key outcomes were (a) scored assessments of each modeled species and niche axis combination, (b) guidance on models needing further development, (c) exploration of the trade‐off between presenting more complex model summaries, which could lead to more thorough validation, versus the longer time these take to evaluate, (d) quantification of the internal consistency of expert opinion based on comparison of assessment scores made on a random subset of models evaluated by both experts. Overall, the experts assessed 39% of species and niche axis combinations to be “poor” and 61% to show a degree of reliability split between “moderate” (30%), “good” (25%), and “excellent” (6%). The two experts agreed in only 43% of cases, reaching greater consensus about poorer models and disagreeing most about models rated as better by either expert. This low agreement rate suggests that a greater number of experts is required to produce reliable assessments and to more fully understand the reasons underlying lack of consensus. While area under curve (AUC) statistics showed generally very good ability of the models to predict random hold‐out samples of the data, there was no correspondence between these and the scores given by the experts and no apparent correlation between AUC and species prevalence. Crowd‐sourcing further assessments by allowing web‐based access to model fits is an obvious next step. To this end, we developed an online application for inspecting and evaluating the fit of each niche surface to its training data. John Wiley and Sons Inc. 2019-10-25 /pmc/articles/PMC6875586/ /pubmed/31788220 http://dx.doi.org/10.1002/ece3.5766 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Smart, Simon M. Jarvis, Susan G. Mizunuma, Toshie Herrero‐Jáuregui, Cristina Fang, Zhou Butler, Adam Alison, Jamie Wilson, Mike Marrs, Robert H. Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title | Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title_full | Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title_fullStr | Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title_full_unstemmed | Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title_short | Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
title_sort | assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6875586/ https://www.ncbi.nlm.nih.gov/pubmed/31788220 http://dx.doi.org/10.1002/ece3.5766 |
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