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Attention-based recurrent neural network for influenza epidemic prediction

BACKGROUND: Influenza is an infectious respiratory disease that can cause serious public health hazard. Due to its huge threat to the society, precise real-time forecasting of influenza outbreaks is of great value to our public. RESULTS: In this paper, we propose a new deep neural network structure...

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Autores principales: Zhu, Xianglei, Fu, Bofeng, Yang, Yaodong, Ma, Yu, Hao, Jianye, Chen, Siqi, Liu, Shuang, Li, Tiegang, Liu, Sen, Guo, Weiming, Liao, Zhenyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6876090/
https://www.ncbi.nlm.nih.gov/pubmed/31760945
http://dx.doi.org/10.1186/s12859-019-3131-8
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author Zhu, Xianglei
Fu, Bofeng
Yang, Yaodong
Ma, Yu
Hao, Jianye
Chen, Siqi
Liu, Shuang
Li, Tiegang
Liu, Sen
Guo, Weiming
Liao, Zhenyu
author_facet Zhu, Xianglei
Fu, Bofeng
Yang, Yaodong
Ma, Yu
Hao, Jianye
Chen, Siqi
Liu, Shuang
Li, Tiegang
Liu, Sen
Guo, Weiming
Liao, Zhenyu
author_sort Zhu, Xianglei
collection PubMed
description BACKGROUND: Influenza is an infectious respiratory disease that can cause serious public health hazard. Due to its huge threat to the society, precise real-time forecasting of influenza outbreaks is of great value to our public. RESULTS: In this paper, we propose a new deep neural network structure that forecasts a real-time influenza-like illness rate (ILI%) in Guangzhou, China. Long short-term memory (LSTM) neural networks is applied to precisely forecast accurateness due to the long-term attribute and diversity of influenza epidemic data. We devise a multi-channel LSTM neural network that can draw multiple information from different types of inputs. We also add attention mechanism to improve forecasting accuracy. By using this structure, we are able to deal with relationships between multiple inputs more appropriately. Our model fully consider the information in the data set, targetedly solving practical problems of the Guangzhou influenza epidemic forecasting. CONCLUSION: We assess the performance of our model by comparing it with different neural network structures and other state-of-the-art methods. The experimental results indicate that our model has strong competitiveness and can provide effective real-time influenza epidemic forecasting.
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spelling pubmed-68760902019-11-29 Attention-based recurrent neural network for influenza epidemic prediction Zhu, Xianglei Fu, Bofeng Yang, Yaodong Ma, Yu Hao, Jianye Chen, Siqi Liu, Shuang Li, Tiegang Liu, Sen Guo, Weiming Liao, Zhenyu BMC Bioinformatics Research BACKGROUND: Influenza is an infectious respiratory disease that can cause serious public health hazard. Due to its huge threat to the society, precise real-time forecasting of influenza outbreaks is of great value to our public. RESULTS: In this paper, we propose a new deep neural network structure that forecasts a real-time influenza-like illness rate (ILI%) in Guangzhou, China. Long short-term memory (LSTM) neural networks is applied to precisely forecast accurateness due to the long-term attribute and diversity of influenza epidemic data. We devise a multi-channel LSTM neural network that can draw multiple information from different types of inputs. We also add attention mechanism to improve forecasting accuracy. By using this structure, we are able to deal with relationships between multiple inputs more appropriately. Our model fully consider the information in the data set, targetedly solving practical problems of the Guangzhou influenza epidemic forecasting. CONCLUSION: We assess the performance of our model by comparing it with different neural network structures and other state-of-the-art methods. The experimental results indicate that our model has strong competitiveness and can provide effective real-time influenza epidemic forecasting. BioMed Central 2019-11-25 /pmc/articles/PMC6876090/ /pubmed/31760945 http://dx.doi.org/10.1186/s12859-019-3131-8 Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Zhu, Xianglei
Fu, Bofeng
Yang, Yaodong
Ma, Yu
Hao, Jianye
Chen, Siqi
Liu, Shuang
Li, Tiegang
Liu, Sen
Guo, Weiming
Liao, Zhenyu
Attention-based recurrent neural network for influenza epidemic prediction
title Attention-based recurrent neural network for influenza epidemic prediction
title_full Attention-based recurrent neural network for influenza epidemic prediction
title_fullStr Attention-based recurrent neural network for influenza epidemic prediction
title_full_unstemmed Attention-based recurrent neural network for influenza epidemic prediction
title_short Attention-based recurrent neural network for influenza epidemic prediction
title_sort attention-based recurrent neural network for influenza epidemic prediction
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6876090/
https://www.ncbi.nlm.nih.gov/pubmed/31760945
http://dx.doi.org/10.1186/s12859-019-3131-8
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