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An evaluation of genetic causes and environmental risks for bilateral optic atrophy
PURPOSE: To assess the clinical utility of next-generation sequencing (NGS) for the diagnosis of patients with optic atrophy (OA). DESIGN: Retrospective cohort study. METHODS: 97 patients were referred to the McMaster University Medical Center (Hamilton, Ontario) for evaluation of bilateral OA. All...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6876833/ https://www.ncbi.nlm.nih.gov/pubmed/31765440 http://dx.doi.org/10.1371/journal.pone.0225656 |
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author | Chen, Andrew T. Brady, Lauren Bulman, Dennis E. Sundaram, Arun N. E. Rodriguez, Amadeo R. Margolin, Edward Waye, John S. Tarnopolsky, Mark A. |
author_facet | Chen, Andrew T. Brady, Lauren Bulman, Dennis E. Sundaram, Arun N. E. Rodriguez, Amadeo R. Margolin, Edward Waye, John S. Tarnopolsky, Mark A. |
author_sort | Chen, Andrew T. |
collection | PubMed |
description | PURPOSE: To assess the clinical utility of next-generation sequencing (NGS) for the diagnosis of patients with optic atrophy (OA). DESIGN: Retrospective cohort study. METHODS: 97 patients were referred to the McMaster University Medical Center (Hamilton, Ontario) for evaluation of bilateral OA. All patients were sent for NGS including a 22 nuclear gene panel and/or complete mitochondrial DNA (mtDNA) sequencing. Positive genetic test results and abnormal vibration sensation were compared in patients +/- environmental exposures or a family history. RESULTS: 19/94 (20.2%) had a positive nuclear variant, of which 15/19 (78.9%) were in the OPA1 gene. No positive mtDNA variants were identified. The detection of a positive genetic variant was significantly different in patients who reported excessive ethanol use, but not in patients who smoke (0/19 (0%) vs. 19/78 (24.4%), P = 0.0164 and 4/22 (18.2%) vs. 15/74 (20.3%), P = 0.829, respectively). Patients with a positive family history were more likely to have a positive genetic variant compared to patients with a negative family history (P = 0.0112). There were significantly more excessive drinkers with an abnormal vibration sensation (P = 0.026), and with a similar trend in smokers (P = 0.074). CONCLUSIONS: All positive genetic variants were identified in nuclear genes. We identified a potential independent pathophysiological link between a history of excessive ethanol consumption and bilateral OA. Further investigations should evaluate and identify potential environmental risk factors for OA. |
format | Online Article Text |
id | pubmed-6876833 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-68768332019-12-08 An evaluation of genetic causes and environmental risks for bilateral optic atrophy Chen, Andrew T. Brady, Lauren Bulman, Dennis E. Sundaram, Arun N. E. Rodriguez, Amadeo R. Margolin, Edward Waye, John S. Tarnopolsky, Mark A. PLoS One Research Article PURPOSE: To assess the clinical utility of next-generation sequencing (NGS) for the diagnosis of patients with optic atrophy (OA). DESIGN: Retrospective cohort study. METHODS: 97 patients were referred to the McMaster University Medical Center (Hamilton, Ontario) for evaluation of bilateral OA. All patients were sent for NGS including a 22 nuclear gene panel and/or complete mitochondrial DNA (mtDNA) sequencing. Positive genetic test results and abnormal vibration sensation were compared in patients +/- environmental exposures or a family history. RESULTS: 19/94 (20.2%) had a positive nuclear variant, of which 15/19 (78.9%) were in the OPA1 gene. No positive mtDNA variants were identified. The detection of a positive genetic variant was significantly different in patients who reported excessive ethanol use, but not in patients who smoke (0/19 (0%) vs. 19/78 (24.4%), P = 0.0164 and 4/22 (18.2%) vs. 15/74 (20.3%), P = 0.829, respectively). Patients with a positive family history were more likely to have a positive genetic variant compared to patients with a negative family history (P = 0.0112). There were significantly more excessive drinkers with an abnormal vibration sensation (P = 0.026), and with a similar trend in smokers (P = 0.074). CONCLUSIONS: All positive genetic variants were identified in nuclear genes. We identified a potential independent pathophysiological link between a history of excessive ethanol consumption and bilateral OA. Further investigations should evaluate and identify potential environmental risk factors for OA. Public Library of Science 2019-11-25 /pmc/articles/PMC6876833/ /pubmed/31765440 http://dx.doi.org/10.1371/journal.pone.0225656 Text en © 2019 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Chen, Andrew T. Brady, Lauren Bulman, Dennis E. Sundaram, Arun N. E. Rodriguez, Amadeo R. Margolin, Edward Waye, John S. Tarnopolsky, Mark A. An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title | An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title_full | An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title_fullStr | An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title_full_unstemmed | An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title_short | An evaluation of genetic causes and environmental risks for bilateral optic atrophy |
title_sort | evaluation of genetic causes and environmental risks for bilateral optic atrophy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6876833/ https://www.ncbi.nlm.nih.gov/pubmed/31765440 http://dx.doi.org/10.1371/journal.pone.0225656 |
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