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Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases
Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2019
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6878946/ https://www.ncbi.nlm.nih.gov/pubmed/31411700 http://dx.doi.org/10.1093/molbev/msz185 |
| _version_ | 1783473537899560960 |
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| author | Priyam, Anurag Woodcroft, Ben J Rai, Vivek Moghul, Ismail Munagala, Alekhya Ter, Filip Chowdhary, Hiten Pieniak, Iwo Maynard, Lawrence J Gibbins, Mark Anthony Moon, HongKee Davis-Richardson, Austin Uludag, Mahmut Watson-Haigh, Nathan S Challis, Richard Nakamura, Hiroyuki Favreau, Emeline Gómez, Esteban A Pluskal, Tomás Leonard, Guy Rumpf, Wolfgang Wurm, Yannick |
| author_facet | Priyam, Anurag Woodcroft, Ben J Rai, Vivek Moghul, Ismail Munagala, Alekhya Ter, Filip Chowdhary, Hiten Pieniak, Iwo Maynard, Lawrence J Gibbins, Mark Anthony Moon, HongKee Davis-Richardson, Austin Uludag, Mahmut Watson-Haigh, Nathan S Challis, Richard Nakamura, Hiroyuki Favreau, Emeline Gómez, Esteban A Pluskal, Tomás Leonard, Guy Rumpf, Wolfgang Wurm, Yannick |
| author_sort | Priyam, Anurag |
| collection | PubMed |
| description | Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers. |
| format | Online Article Text |
| id | pubmed-6878946 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2019 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-68789462019-12-03 Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases Priyam, Anurag Woodcroft, Ben J Rai, Vivek Moghul, Ismail Munagala, Alekhya Ter, Filip Chowdhary, Hiten Pieniak, Iwo Maynard, Lawrence J Gibbins, Mark Anthony Moon, HongKee Davis-Richardson, Austin Uludag, Mahmut Watson-Haigh, Nathan S Challis, Richard Nakamura, Hiroyuki Favreau, Emeline Gómez, Esteban A Pluskal, Tomás Leonard, Guy Rumpf, Wolfgang Wurm, Yannick Mol Biol Evol Resources Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers. Oxford University Press 2019-12 2019-08-14 /pmc/articles/PMC6878946/ /pubmed/31411700 http://dx.doi.org/10.1093/molbev/msz185 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Resources Priyam, Anurag Woodcroft, Ben J Rai, Vivek Moghul, Ismail Munagala, Alekhya Ter, Filip Chowdhary, Hiten Pieniak, Iwo Maynard, Lawrence J Gibbins, Mark Anthony Moon, HongKee Davis-Richardson, Austin Uludag, Mahmut Watson-Haigh, Nathan S Challis, Richard Nakamura, Hiroyuki Favreau, Emeline Gómez, Esteban A Pluskal, Tomás Leonard, Guy Rumpf, Wolfgang Wurm, Yannick Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title | Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title_full | Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title_fullStr | Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title_full_unstemmed | Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title_short | Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases |
| title_sort | sequenceserver: a modern graphical user interface for custom blast databases |
| topic | Resources |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6878946/ https://www.ncbi.nlm.nih.gov/pubmed/31411700 http://dx.doi.org/10.1093/molbev/msz185 |
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