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High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis

Powerful information processing and ubiquitous computing are crucial for all machines and living organisms. The Watson-Crick base-pairing principle endows DNA with excellent recognition and assembly abilities, which facilitates the design of DNA computers for achieving intelligent systems. However,...

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Autores principales: Su, Haomiao, Xu, Jinglei, Wang, Qi, Wang, Fuan, Zhou, Xiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879481/
https://www.ncbi.nlm.nih.gov/pubmed/31772166
http://dx.doi.org/10.1038/s41467-019-13310-2
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author Su, Haomiao
Xu, Jinglei
Wang, Qi
Wang, Fuan
Zhou, Xiang
author_facet Su, Haomiao
Xu, Jinglei
Wang, Qi
Wang, Fuan
Zhou, Xiang
author_sort Su, Haomiao
collection PubMed
description Powerful information processing and ubiquitous computing are crucial for all machines and living organisms. The Watson-Crick base-pairing principle endows DNA with excellent recognition and assembly abilities, which facilitates the design of DNA computers for achieving intelligent systems. However, current DNA computational systems are always constrained by poor integration efficiency, complicated device structures or limited computational functions. Here, we show a DNA arithmetic logic unit (ALU) consisting of elemental DNA logic gates using polymerase-mediated strand displacement. The use of an enzyme resulted in highly efficient logic gates suitable for multiple and cascaded computation. Based on our basic single-rail DNA configuration, additional combined logic gates (e.g., a full adder and a 4:1 multiplexer) have been constructed. Finally, we integrate the gates and assemble the crucial ALU. Our strategy provides a facile strategy for assembling a large-scale complex DNA computer system, highlighting the great potential for programming the molecular behaviors of complicated biosystems.
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spelling pubmed-68794812019-11-29 High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis Su, Haomiao Xu, Jinglei Wang, Qi Wang, Fuan Zhou, Xiang Nat Commun Article Powerful information processing and ubiquitous computing are crucial for all machines and living organisms. The Watson-Crick base-pairing principle endows DNA with excellent recognition and assembly abilities, which facilitates the design of DNA computers for achieving intelligent systems. However, current DNA computational systems are always constrained by poor integration efficiency, complicated device structures or limited computational functions. Here, we show a DNA arithmetic logic unit (ALU) consisting of elemental DNA logic gates using polymerase-mediated strand displacement. The use of an enzyme resulted in highly efficient logic gates suitable for multiple and cascaded computation. Based on our basic single-rail DNA configuration, additional combined logic gates (e.g., a full adder and a 4:1 multiplexer) have been constructed. Finally, we integrate the gates and assemble the crucial ALU. Our strategy provides a facile strategy for assembling a large-scale complex DNA computer system, highlighting the great potential for programming the molecular behaviors of complicated biosystems. Nature Publishing Group UK 2019-11-26 /pmc/articles/PMC6879481/ /pubmed/31772166 http://dx.doi.org/10.1038/s41467-019-13310-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Su, Haomiao
Xu, Jinglei
Wang, Qi
Wang, Fuan
Zhou, Xiang
High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title_full High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title_fullStr High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title_full_unstemmed High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title_short High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
title_sort high-efficiency and integrable dna arithmetic and logic system based on strand displacement synthesis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879481/
https://www.ncbi.nlm.nih.gov/pubmed/31772166
http://dx.doi.org/10.1038/s41467-019-13310-2
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