Cargando…

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

Metagenomic sequence data from defined mock communities is crucial for the assessment of sequencing platform performance and downstream analyses, including assembly, binning and taxonomic assignment. We report a comparison of shotgun metagenome sequencing and assembly metrics of a defined microbial...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sevim, Volkan, Lee, Juna, Egan, Robert, Clum, Alicia, Hundley, Hope, Lee, Janey, Everroad, R. Craig, Detweiler, Angela M., Bebout, Brad M., Pett-Ridge, Jennifer, Göker, Markus, Murray, Alison E., Lindemann, Stephen R., Klenk, Hans-Peter, O’Malley, Ronan, Zane, Matthew, Cheng, Jan-Fang, Copeland, Alex, Daum, Christopher, Singer, Esther, Woyke, Tanja
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2019
Materias:	Data Descriptor
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879543/ https://www.ncbi.nlm.nih.gov/pubmed/31772173 http://dx.doi.org/10.1038/s41597-019-0287-z

Ejemplares similares

Complete Genome Sequence of Neisseria musculi Using Illumina and PacBio Sequencing
por: Thapa, Eliza, et al.
Publicado: (2021)

Next generation sequencing data of a defined microbial mock community
por: Singer, Esther, et al.
Publicado: (2016)

Improved High-Throughput Sequencing of the Human Oral Microbiome: From Illumina to PacBio
por: Zhang, Jie, et al.
Publicado: (2020)

Comprehensive transcriptome characterization of Grus japonensis using PacBio SMRT and Illumina sequencing
por: Ye, Wentao, et al.
Publicado: (2021)

Comprehensive transcriptome analysis of sika deer antler using PacBio and Illumina sequencing
por: Zhang, Ranran, et al.
Publicado: (2022)

Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria
por: Everroad, R. Craig, et al.
Publicado: (2016)

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat
por: Lee, Jackson Z., et al.
Publicado: (2018)

Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1
por: Everroad, R. Craig, et al.
Publicado: (2013)

Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing
por: Lee, Sang In, et al.
Publicado: (2021)

Complete Genome Sequence of Nocardia farcinica W6977(T) Obtained by Combining Illumina and PacBio Reads
por: Gulvik, Christopher A., et al.
Publicado: (2019)

Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
por: Rayamajhi, Niraj, et al.
Publicado: (2022)

Assembly of an early-matured japonica (Geng) rice genome, Suijing18, based on PacBio and Illumina sequencing
por: Nie, Shou-Jun, et al.
Publicado: (2017)

Complete Genome Sequence of Enterobacter asburiae Strain AEB30, Determined Using Illumina and PacBio Sequencing
por: Tran, Thao D., et al.
Publicado: (2021)

Comparative transcriptome analysis of dioecious floral development in Trachycarpus fortunei using Illumina and PacBio SMRT sequencing
por: Xiao, Feng, et al.
Publicado: (2023)

PacBio Sequencing and Its Applications
por: Rhoads, Anthony, et al.
Publicado: (2015)

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
por: Zhang, Jianwei, et al.
Publicado: (2016)

PacBio and Illumina RNA Sequencing Identify Alternative Splicing Events in Response to Cold Stress in Two Poplar Species
por: Yang, Jingli, et al.
Publicado: (2021)

Characterization of the Gene Expression Profile Response to Drought Stress in Populus ussuriensis Using PacBio SMRT and Illumina Sequencing
por: Li, Wenlong, et al.
Publicado: (2022)

PacBio Full-Length and Illumina Transcriptomes of the Gill Reveal the Molecular Response of Corbicula fluminea under Aerial Exposure
por: Zhang, Ting, et al.
Publicado: (2022)

Genome Assembly and Microsatellite Marker Development Using Illumina and PacBio Sequencing in the Carex pumila (Cyperaceae) from Korea
por: Kim, Kang-Rae, et al.
Publicado: (2023)

The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly
por: Roscito, Juliana G, et al.
Publicado: (2018)

Characterization of Drought-Responsive Transcriptome During Seed Germination in Adzuki Bean (Vigna angularis L.) by PacBio SMRT and Illumina Sequencing
por: Zhu, Zhenzhen, et al.
Publicado: (2020)

Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1
por: Morabito, Christian, et al.
Publicado: (2020)

Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms
por: Wang, Yongli, et al.
Publicado: (2021)

The complete chloroplast genome of Camellia brevistyla (Hayata) Coh. St. (Theaceae: Ericales) from China based on PacBio and Illumina data
por: Yin, Xin, et al.
Publicado: (2021)

Gene Expression Profile and Co-Expression Network of Pearl Gentian Grouper under Cold Stress by Integrating Illumina and PacBio Sequences
por: Miao, Ben-Ben, et al.
Publicado: (2021)

Characterization of the gene expression profile response to drought stress in Haloxylon using PacBio single-molecule real-time and Illumina sequencing
por: Yang, Fang, et al.
Publicado: (2022)

Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes
por: Liu, Min, et al.
Publicado: (2023)

Investigation of the vaginal microbiota of dairy cows through genetic sequencing of short (Illumina) and long (PacBio) reads and associations with gestational status
por: Souza, Anne Kemmer, et al.
Publicado: (2023)

HISEA: HIerarchical SEed Aligner for PacBio data
por: Khiste, Nilesh, et al.
Publicado: (2017)

High-Quality Draft Genome Sequence of the Actinobacterium Nocardia terpenica IFM 0406, Producer of the Immunosuppressant Brasilicardins, Using Illumina and PacBio Technologies
por: Buchmann, Anina, et al.
Publicado: (2016)

PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex Burkholderia pseudomallei Two-Chromosome Genome
por: Teng, Jade L. L., et al.
Publicado: (2017)

Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia
por: Rao, Shen, et al.
Publicado: (2020)

Transcriptome profiling of Capsicum annuum using Illumina- and PacBio SMRT-based RNA-Seq for in-depth understanding of genes involved in trichome formation
por: Gao, Shenghua, et al.
Publicado: (2021)

PaSS: a sequencing simulator for PacBio sequencing
por: Zhang, Wenmin, et al.
Publicado: (2019)

Complete genome sequences of Streptococcus pyogenes type strain reveal 100%-match between PacBio-solo and Illumina-Oxford Nanopore hybrid assemblies
por: Salvà-Serra, Francisco, et al.
Publicado: (2020)

PacBio and Illumina MiSeq Amplicon Sequencing Confirm Full Recovery of the Bacterial Community After Subacute Ruminal Acidosis Challenge in the RUSITEC System
por: Brede, Melanie, et al.
Publicado: (2020)

Improving PacBio Long Read Accuracy by Short Read Alignment
por: Au, Kin Fai, et al.
Publicado: (2012)

A fault-tolerant method for HLA typing with PacBio data
por: Chang, Chia-Jung, et al.
Publicado: (2014)

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
por: Zuo, Chunman, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_5ou4f7ihfdls794skvvvmlk6vs