Cargando…

An intrinsically disordered proteins community for ELIXIR

Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of the...

Descripción completa

Detalles Bibliográficos
Autores principales: Davey, Norman E., Babu, M. Madan, Blackledge, Martin, Bridge, Alan, Capella-Gutierrez, Salvador, Dosztanyi, Zsuzsanna, Drysdale, Rachel, Edwards, Richard J., Elofsson, Arne, Felli, Isabella C., Gibson, Toby J., Gutmanas, Aleksandras, Hancock, John M., Harrow, Jen, Higgins, Desmond, Jeffries, Cy M., Le Mercier, Philippe, Mészáros, Balint, Necci, Marco, Notredame, Cedric, Orchard, Sandra, Ouzounis, Christos A., Pancsa, Rita, Papaleo, Elena, Pierattelli, Roberta, Piovesan, Damiano, Promponas, Vasilis J., Ruch, Patrick, Rustici, Gabriella, Romero, Pedro, Sarntivijai, Sirarat, Saunders, Gary, Schuler, Benjamin, Sharan, Malvika, Shields, Denis C., Sussman, Joel L., Tedds, Jonathan A., Tompa, Peter, Turewicz, Michael, Vondrasek, Jiri, Vranken, Wim F., Wallace, Bonnie Ann, Wichapong, Kanin, Tosatto, Silvio C. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6880265/
https://www.ncbi.nlm.nih.gov/pubmed/31824649
http://dx.doi.org/10.12688/f1000research.20136.1
_version_ 1783473726350688256
author Davey, Norman E.
Babu, M. Madan
Blackledge, Martin
Bridge, Alan
Capella-Gutierrez, Salvador
Dosztanyi, Zsuzsanna
Drysdale, Rachel
Edwards, Richard J.
Elofsson, Arne
Felli, Isabella C.
Gibson, Toby J.
Gutmanas, Aleksandras
Hancock, John M.
Harrow, Jen
Higgins, Desmond
Jeffries, Cy M.
Le Mercier, Philippe
Mészáros, Balint
Necci, Marco
Notredame, Cedric
Orchard, Sandra
Ouzounis, Christos A.
Pancsa, Rita
Papaleo, Elena
Pierattelli, Roberta
Piovesan, Damiano
Promponas, Vasilis J.
Ruch, Patrick
Rustici, Gabriella
Romero, Pedro
Sarntivijai, Sirarat
Saunders, Gary
Schuler, Benjamin
Sharan, Malvika
Shields, Denis C.
Sussman, Joel L.
Tedds, Jonathan A.
Tompa, Peter
Turewicz, Michael
Vondrasek, Jiri
Vranken, Wim F.
Wallace, Bonnie Ann
Wichapong, Kanin
Tosatto, Silvio C. E.
author_facet Davey, Norman E.
Babu, M. Madan
Blackledge, Martin
Bridge, Alan
Capella-Gutierrez, Salvador
Dosztanyi, Zsuzsanna
Drysdale, Rachel
Edwards, Richard J.
Elofsson, Arne
Felli, Isabella C.
Gibson, Toby J.
Gutmanas, Aleksandras
Hancock, John M.
Harrow, Jen
Higgins, Desmond
Jeffries, Cy M.
Le Mercier, Philippe
Mészáros, Balint
Necci, Marco
Notredame, Cedric
Orchard, Sandra
Ouzounis, Christos A.
Pancsa, Rita
Papaleo, Elena
Pierattelli, Roberta
Piovesan, Damiano
Promponas, Vasilis J.
Ruch, Patrick
Rustici, Gabriella
Romero, Pedro
Sarntivijai, Sirarat
Saunders, Gary
Schuler, Benjamin
Sharan, Malvika
Shields, Denis C.
Sussman, Joel L.
Tedds, Jonathan A.
Tompa, Peter
Turewicz, Michael
Vondrasek, Jiri
Vranken, Wim F.
Wallace, Bonnie Ann
Wichapong, Kanin
Tosatto, Silvio C. E.
author_sort Davey, Norman E.
collection PubMed
description Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled “An intrinsically disordered protein user community proposal for ELIXIR” held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders.
format Online
Article
Text
id pubmed-6880265
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher F1000 Research Limited
record_format MEDLINE/PubMed
spelling pubmed-68802652019-12-09 An intrinsically disordered proteins community for ELIXIR Davey, Norman E. Babu, M. Madan Blackledge, Martin Bridge, Alan Capella-Gutierrez, Salvador Dosztanyi, Zsuzsanna Drysdale, Rachel Edwards, Richard J. Elofsson, Arne Felli, Isabella C. Gibson, Toby J. Gutmanas, Aleksandras Hancock, John M. Harrow, Jen Higgins, Desmond Jeffries, Cy M. Le Mercier, Philippe Mészáros, Balint Necci, Marco Notredame, Cedric Orchard, Sandra Ouzounis, Christos A. Pancsa, Rita Papaleo, Elena Pierattelli, Roberta Piovesan, Damiano Promponas, Vasilis J. Ruch, Patrick Rustici, Gabriella Romero, Pedro Sarntivijai, Sirarat Saunders, Gary Schuler, Benjamin Sharan, Malvika Shields, Denis C. Sussman, Joel L. Tedds, Jonathan A. Tompa, Peter Turewicz, Michael Vondrasek, Jiri Vranken, Wim F. Wallace, Bonnie Ann Wichapong, Kanin Tosatto, Silvio C. E. F1000Res Opinion Article Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled “An intrinsically disordered protein user community proposal for ELIXIR” held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders. F1000 Research Limited 2019-10-15 /pmc/articles/PMC6880265/ /pubmed/31824649 http://dx.doi.org/10.12688/f1000research.20136.1 Text en Copyright: © 2019 Davey NE et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Opinion Article
Davey, Norman E.
Babu, M. Madan
Blackledge, Martin
Bridge, Alan
Capella-Gutierrez, Salvador
Dosztanyi, Zsuzsanna
Drysdale, Rachel
Edwards, Richard J.
Elofsson, Arne
Felli, Isabella C.
Gibson, Toby J.
Gutmanas, Aleksandras
Hancock, John M.
Harrow, Jen
Higgins, Desmond
Jeffries, Cy M.
Le Mercier, Philippe
Mészáros, Balint
Necci, Marco
Notredame, Cedric
Orchard, Sandra
Ouzounis, Christos A.
Pancsa, Rita
Papaleo, Elena
Pierattelli, Roberta
Piovesan, Damiano
Promponas, Vasilis J.
Ruch, Patrick
Rustici, Gabriella
Romero, Pedro
Sarntivijai, Sirarat
Saunders, Gary
Schuler, Benjamin
Sharan, Malvika
Shields, Denis C.
Sussman, Joel L.
Tedds, Jonathan A.
Tompa, Peter
Turewicz, Michael
Vondrasek, Jiri
Vranken, Wim F.
Wallace, Bonnie Ann
Wichapong, Kanin
Tosatto, Silvio C. E.
An intrinsically disordered proteins community for ELIXIR
title An intrinsically disordered proteins community for ELIXIR
title_full An intrinsically disordered proteins community for ELIXIR
title_fullStr An intrinsically disordered proteins community for ELIXIR
title_full_unstemmed An intrinsically disordered proteins community for ELIXIR
title_short An intrinsically disordered proteins community for ELIXIR
title_sort intrinsically disordered proteins community for elixir
topic Opinion Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6880265/
https://www.ncbi.nlm.nih.gov/pubmed/31824649
http://dx.doi.org/10.12688/f1000research.20136.1
work_keys_str_mv AT daveynormane anintrinsicallydisorderedproteinscommunityforelixir
AT babummadan anintrinsicallydisorderedproteinscommunityforelixir
AT blackledgemartin anintrinsicallydisorderedproteinscommunityforelixir
AT bridgealan anintrinsicallydisorderedproteinscommunityforelixir
AT capellagutierrezsalvador anintrinsicallydisorderedproteinscommunityforelixir
AT dosztanyizsuzsanna anintrinsicallydisorderedproteinscommunityforelixir
AT drysdalerachel anintrinsicallydisorderedproteinscommunityforelixir
AT edwardsrichardj anintrinsicallydisorderedproteinscommunityforelixir
AT elofssonarne anintrinsicallydisorderedproteinscommunityforelixir
AT felliisabellac anintrinsicallydisorderedproteinscommunityforelixir
AT gibsontobyj anintrinsicallydisorderedproteinscommunityforelixir
AT gutmanasaleksandras anintrinsicallydisorderedproteinscommunityforelixir
AT hancockjohnm anintrinsicallydisorderedproteinscommunityforelixir
AT harrowjen anintrinsicallydisorderedproteinscommunityforelixir
AT higginsdesmond anintrinsicallydisorderedproteinscommunityforelixir
AT jeffriescym anintrinsicallydisorderedproteinscommunityforelixir
AT lemercierphilippe anintrinsicallydisorderedproteinscommunityforelixir
AT meszarosbalint anintrinsicallydisorderedproteinscommunityforelixir
AT neccimarco anintrinsicallydisorderedproteinscommunityforelixir
AT notredamecedric anintrinsicallydisorderedproteinscommunityforelixir
AT orchardsandra anintrinsicallydisorderedproteinscommunityforelixir
AT ouzounischristosa anintrinsicallydisorderedproteinscommunityforelixir
AT pancsarita anintrinsicallydisorderedproteinscommunityforelixir
AT papaleoelena anintrinsicallydisorderedproteinscommunityforelixir
AT pierattelliroberta anintrinsicallydisorderedproteinscommunityforelixir
AT piovesandamiano anintrinsicallydisorderedproteinscommunityforelixir
AT promponasvasilisj anintrinsicallydisorderedproteinscommunityforelixir
AT ruchpatrick anintrinsicallydisorderedproteinscommunityforelixir
AT rusticigabriella anintrinsicallydisorderedproteinscommunityforelixir
AT romeropedro anintrinsicallydisorderedproteinscommunityforelixir
AT sarntivijaisirarat anintrinsicallydisorderedproteinscommunityforelixir
AT saundersgary anintrinsicallydisorderedproteinscommunityforelixir
AT schulerbenjamin anintrinsicallydisorderedproteinscommunityforelixir
AT sharanmalvika anintrinsicallydisorderedproteinscommunityforelixir
AT shieldsdenisc anintrinsicallydisorderedproteinscommunityforelixir
AT sussmanjoell anintrinsicallydisorderedproteinscommunityforelixir
AT teddsjonathana anintrinsicallydisorderedproteinscommunityforelixir
AT tompapeter anintrinsicallydisorderedproteinscommunityforelixir
AT turewiczmichael anintrinsicallydisorderedproteinscommunityforelixir
AT vondrasekjiri anintrinsicallydisorderedproteinscommunityforelixir
AT vrankenwimf anintrinsicallydisorderedproteinscommunityforelixir
AT wallacebonnieann anintrinsicallydisorderedproteinscommunityforelixir
AT wichapongkanin anintrinsicallydisorderedproteinscommunityforelixir
AT tosattosilvioce anintrinsicallydisorderedproteinscommunityforelixir
AT daveynormane intrinsicallydisorderedproteinscommunityforelixir
AT babummadan intrinsicallydisorderedproteinscommunityforelixir
AT blackledgemartin intrinsicallydisorderedproteinscommunityforelixir
AT bridgealan intrinsicallydisorderedproteinscommunityforelixir
AT capellagutierrezsalvador intrinsicallydisorderedproteinscommunityforelixir
AT dosztanyizsuzsanna intrinsicallydisorderedproteinscommunityforelixir
AT drysdalerachel intrinsicallydisorderedproteinscommunityforelixir
AT edwardsrichardj intrinsicallydisorderedproteinscommunityforelixir
AT elofssonarne intrinsicallydisorderedproteinscommunityforelixir
AT felliisabellac intrinsicallydisorderedproteinscommunityforelixir
AT gibsontobyj intrinsicallydisorderedproteinscommunityforelixir
AT gutmanasaleksandras intrinsicallydisorderedproteinscommunityforelixir
AT hancockjohnm intrinsicallydisorderedproteinscommunityforelixir
AT harrowjen intrinsicallydisorderedproteinscommunityforelixir
AT higginsdesmond intrinsicallydisorderedproteinscommunityforelixir
AT jeffriescym intrinsicallydisorderedproteinscommunityforelixir
AT lemercierphilippe intrinsicallydisorderedproteinscommunityforelixir
AT meszarosbalint intrinsicallydisorderedproteinscommunityforelixir
AT neccimarco intrinsicallydisorderedproteinscommunityforelixir
AT notredamecedric intrinsicallydisorderedproteinscommunityforelixir
AT orchardsandra intrinsicallydisorderedproteinscommunityforelixir
AT ouzounischristosa intrinsicallydisorderedproteinscommunityforelixir
AT pancsarita intrinsicallydisorderedproteinscommunityforelixir
AT papaleoelena intrinsicallydisorderedproteinscommunityforelixir
AT pierattelliroberta intrinsicallydisorderedproteinscommunityforelixir
AT piovesandamiano intrinsicallydisorderedproteinscommunityforelixir
AT promponasvasilisj intrinsicallydisorderedproteinscommunityforelixir
AT ruchpatrick intrinsicallydisorderedproteinscommunityforelixir
AT rusticigabriella intrinsicallydisorderedproteinscommunityforelixir
AT romeropedro intrinsicallydisorderedproteinscommunityforelixir
AT sarntivijaisirarat intrinsicallydisorderedproteinscommunityforelixir
AT saundersgary intrinsicallydisorderedproteinscommunityforelixir
AT schulerbenjamin intrinsicallydisorderedproteinscommunityforelixir
AT sharanmalvika intrinsicallydisorderedproteinscommunityforelixir
AT shieldsdenisc intrinsicallydisorderedproteinscommunityforelixir
AT sussmanjoell intrinsicallydisorderedproteinscommunityforelixir
AT teddsjonathana intrinsicallydisorderedproteinscommunityforelixir
AT tompapeter intrinsicallydisorderedproteinscommunityforelixir
AT turewiczmichael intrinsicallydisorderedproteinscommunityforelixir
AT vondrasekjiri intrinsicallydisorderedproteinscommunityforelixir
AT vrankenwimf intrinsicallydisorderedproteinscommunityforelixir
AT wallacebonnieann intrinsicallydisorderedproteinscommunityforelixir
AT wichapongkanin intrinsicallydisorderedproteinscommunityforelixir
AT tosattosilvioce intrinsicallydisorderedproteinscommunityforelixir