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An intrinsically disordered proteins community for ELIXIR
Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of the...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6880265/ https://www.ncbi.nlm.nih.gov/pubmed/31824649 http://dx.doi.org/10.12688/f1000research.20136.1 |
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author | Davey, Norman E. Babu, M. Madan Blackledge, Martin Bridge, Alan Capella-Gutierrez, Salvador Dosztanyi, Zsuzsanna Drysdale, Rachel Edwards, Richard J. Elofsson, Arne Felli, Isabella C. Gibson, Toby J. Gutmanas, Aleksandras Hancock, John M. Harrow, Jen Higgins, Desmond Jeffries, Cy M. Le Mercier, Philippe Mészáros, Balint Necci, Marco Notredame, Cedric Orchard, Sandra Ouzounis, Christos A. Pancsa, Rita Papaleo, Elena Pierattelli, Roberta Piovesan, Damiano Promponas, Vasilis J. Ruch, Patrick Rustici, Gabriella Romero, Pedro Sarntivijai, Sirarat Saunders, Gary Schuler, Benjamin Sharan, Malvika Shields, Denis C. Sussman, Joel L. Tedds, Jonathan A. Tompa, Peter Turewicz, Michael Vondrasek, Jiri Vranken, Wim F. Wallace, Bonnie Ann Wichapong, Kanin Tosatto, Silvio C. E. |
author_facet | Davey, Norman E. Babu, M. Madan Blackledge, Martin Bridge, Alan Capella-Gutierrez, Salvador Dosztanyi, Zsuzsanna Drysdale, Rachel Edwards, Richard J. Elofsson, Arne Felli, Isabella C. Gibson, Toby J. Gutmanas, Aleksandras Hancock, John M. Harrow, Jen Higgins, Desmond Jeffries, Cy M. Le Mercier, Philippe Mészáros, Balint Necci, Marco Notredame, Cedric Orchard, Sandra Ouzounis, Christos A. Pancsa, Rita Papaleo, Elena Pierattelli, Roberta Piovesan, Damiano Promponas, Vasilis J. Ruch, Patrick Rustici, Gabriella Romero, Pedro Sarntivijai, Sirarat Saunders, Gary Schuler, Benjamin Sharan, Malvika Shields, Denis C. Sussman, Joel L. Tedds, Jonathan A. Tompa, Peter Turewicz, Michael Vondrasek, Jiri Vranken, Wim F. Wallace, Bonnie Ann Wichapong, Kanin Tosatto, Silvio C. E. |
author_sort | Davey, Norman E. |
collection | PubMed |
description | Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled “An intrinsically disordered protein user community proposal for ELIXIR” held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders. |
format | Online Article Text |
id | pubmed-6880265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-68802652019-12-09 An intrinsically disordered proteins community for ELIXIR Davey, Norman E. Babu, M. Madan Blackledge, Martin Bridge, Alan Capella-Gutierrez, Salvador Dosztanyi, Zsuzsanna Drysdale, Rachel Edwards, Richard J. Elofsson, Arne Felli, Isabella C. Gibson, Toby J. Gutmanas, Aleksandras Hancock, John M. Harrow, Jen Higgins, Desmond Jeffries, Cy M. Le Mercier, Philippe Mészáros, Balint Necci, Marco Notredame, Cedric Orchard, Sandra Ouzounis, Christos A. Pancsa, Rita Papaleo, Elena Pierattelli, Roberta Piovesan, Damiano Promponas, Vasilis J. Ruch, Patrick Rustici, Gabriella Romero, Pedro Sarntivijai, Sirarat Saunders, Gary Schuler, Benjamin Sharan, Malvika Shields, Denis C. Sussman, Joel L. Tedds, Jonathan A. Tompa, Peter Turewicz, Michael Vondrasek, Jiri Vranken, Wim F. Wallace, Bonnie Ann Wichapong, Kanin Tosatto, Silvio C. E. F1000Res Opinion Article Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled “An intrinsically disordered protein user community proposal for ELIXIR” held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders. F1000 Research Limited 2019-10-15 /pmc/articles/PMC6880265/ /pubmed/31824649 http://dx.doi.org/10.12688/f1000research.20136.1 Text en Copyright: © 2019 Davey NE et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Opinion Article Davey, Norman E. Babu, M. Madan Blackledge, Martin Bridge, Alan Capella-Gutierrez, Salvador Dosztanyi, Zsuzsanna Drysdale, Rachel Edwards, Richard J. Elofsson, Arne Felli, Isabella C. Gibson, Toby J. Gutmanas, Aleksandras Hancock, John M. Harrow, Jen Higgins, Desmond Jeffries, Cy M. Le Mercier, Philippe Mészáros, Balint Necci, Marco Notredame, Cedric Orchard, Sandra Ouzounis, Christos A. Pancsa, Rita Papaleo, Elena Pierattelli, Roberta Piovesan, Damiano Promponas, Vasilis J. Ruch, Patrick Rustici, Gabriella Romero, Pedro Sarntivijai, Sirarat Saunders, Gary Schuler, Benjamin Sharan, Malvika Shields, Denis C. Sussman, Joel L. Tedds, Jonathan A. Tompa, Peter Turewicz, Michael Vondrasek, Jiri Vranken, Wim F. Wallace, Bonnie Ann Wichapong, Kanin Tosatto, Silvio C. E. An intrinsically disordered proteins community for ELIXIR |
title | An intrinsically disordered proteins community for ELIXIR |
title_full | An intrinsically disordered proteins community for ELIXIR |
title_fullStr | An intrinsically disordered proteins community for ELIXIR |
title_full_unstemmed | An intrinsically disordered proteins community for ELIXIR |
title_short | An intrinsically disordered proteins community for ELIXIR |
title_sort | intrinsically disordered proteins community for elixir |
topic | Opinion Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6880265/ https://www.ncbi.nlm.nih.gov/pubmed/31824649 http://dx.doi.org/10.12688/f1000research.20136.1 |
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