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Toward Predictive Molecular Dynamics Simulations of Asphaltenes in Toluene and Heptane
[Image: see text] The conventional definition of asphaltenes is based on their solubility in toluene and their insolubility in heptane. We have utilized this definition to study the influence of partial charge parametrization on the aggregation behavior of asphaltenes using classical atomistic molec...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882142/ https://www.ncbi.nlm.nih.gov/pubmed/31788635 http://dx.doi.org/10.1021/acsomega.9b02992 |
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author | Glova, Artyom D. Larin, Sergey V. Nazarychev, Victor M. Kenny, Josè M. Lyulin, Alexey V. Lyulin, Sergey V. |
author_facet | Glova, Artyom D. Larin, Sergey V. Nazarychev, Victor M. Kenny, Josè M. Lyulin, Alexey V. Lyulin, Sergey V. |
author_sort | Glova, Artyom D. |
collection | PubMed |
description | [Image: see text] The conventional definition of asphaltenes is based on their solubility in toluene and their insolubility in heptane. We have utilized this definition to study the influence of partial charge parametrization on the aggregation behavior of asphaltenes using classical atomistic molecular dynamics simulations performed on the microsecond time scale. Under consideration here are toluene- and heptane-based systems with different partial charges parametrized using the general AMBER force field (GAFF). Systems with standard GAFF partial charges calculated by the AM1-BCC and HF/6-31G*(RESP) methods were simulated alongside systems without partial charges. The partial charges implemented differ in terms of the resulting electrical negativity of the asphaltene polyaromatic core, with the AM1-BCC method giving the greatest magnitude of the total core charge. Based on our analysis of the molecular relaxation and orientation, and on the aggregation behavior of asphaltenes in toluene and heptane, we proposed to use the partial charges obtained by the AM1-BCC method for the study of asphaltene aggregates. A good agreement with available experimental data was observed on the sizes of the aggregates, their fractal dimensions, and the solvent entrainment for the model asphaltenes in toluene and heptane. From the results obtained, we conclude that for a better predictive ability, simulation parameters must be carefully chosen, with particular attention paid to the partial charges owing to their influence on the electrical negativity of the asphaltene core and on the asphaltenes aggregation. |
format | Online Article Text |
id | pubmed-6882142 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-68821422019-11-29 Toward Predictive Molecular Dynamics Simulations of Asphaltenes in Toluene and Heptane Glova, Artyom D. Larin, Sergey V. Nazarychev, Victor M. Kenny, Josè M. Lyulin, Alexey V. Lyulin, Sergey V. ACS Omega [Image: see text] The conventional definition of asphaltenes is based on their solubility in toluene and their insolubility in heptane. We have utilized this definition to study the influence of partial charge parametrization on the aggregation behavior of asphaltenes using classical atomistic molecular dynamics simulations performed on the microsecond time scale. Under consideration here are toluene- and heptane-based systems with different partial charges parametrized using the general AMBER force field (GAFF). Systems with standard GAFF partial charges calculated by the AM1-BCC and HF/6-31G*(RESP) methods were simulated alongside systems without partial charges. The partial charges implemented differ in terms of the resulting electrical negativity of the asphaltene polyaromatic core, with the AM1-BCC method giving the greatest magnitude of the total core charge. Based on our analysis of the molecular relaxation and orientation, and on the aggregation behavior of asphaltenes in toluene and heptane, we proposed to use the partial charges obtained by the AM1-BCC method for the study of asphaltene aggregates. A good agreement with available experimental data was observed on the sizes of the aggregates, their fractal dimensions, and the solvent entrainment for the model asphaltenes in toluene and heptane. From the results obtained, we conclude that for a better predictive ability, simulation parameters must be carefully chosen, with particular attention paid to the partial charges owing to their influence on the electrical negativity of the asphaltene core and on the asphaltenes aggregation. American Chemical Society 2019-11-12 /pmc/articles/PMC6882142/ /pubmed/31788635 http://dx.doi.org/10.1021/acsomega.9b02992 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Glova, Artyom D. Larin, Sergey V. Nazarychev, Victor M. Kenny, Josè M. Lyulin, Alexey V. Lyulin, Sergey V. Toward Predictive Molecular Dynamics Simulations of Asphaltenes in Toluene and Heptane |
title | Toward Predictive Molecular Dynamics Simulations of
Asphaltenes in Toluene and Heptane |
title_full | Toward Predictive Molecular Dynamics Simulations of
Asphaltenes in Toluene and Heptane |
title_fullStr | Toward Predictive Molecular Dynamics Simulations of
Asphaltenes in Toluene and Heptane |
title_full_unstemmed | Toward Predictive Molecular Dynamics Simulations of
Asphaltenes in Toluene and Heptane |
title_short | Toward Predictive Molecular Dynamics Simulations of
Asphaltenes in Toluene and Heptane |
title_sort | toward predictive molecular dynamics simulations of
asphaltenes in toluene and heptane |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882142/ https://www.ncbi.nlm.nih.gov/pubmed/31788635 http://dx.doi.org/10.1021/acsomega.9b02992 |
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