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ACID: a free tool for drug repurposing using consensus inverse docking strategy

Drug repurposing offers a promising alternative to dramatically shorten the process of traditional de novo development of a drug. These efforts leverage the fact that a single molecule can act on multiple targets and could be beneficial to indications where the additional targets are relevant. Hence...

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Autores principales: Wang, Fan, Wu, Feng-Xu, Li, Cheng-Zhang, Jia, Chen-Yang, Su, Sun-Wen, Hao, Ge-Fei, Yang, Guang-Fu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882193/
https://www.ncbi.nlm.nih.gov/pubmed/33430982
http://dx.doi.org/10.1186/s13321-019-0394-z
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author Wang, Fan
Wu, Feng-Xu
Li, Cheng-Zhang
Jia, Chen-Yang
Su, Sun-Wen
Hao, Ge-Fei
Yang, Guang-Fu
author_facet Wang, Fan
Wu, Feng-Xu
Li, Cheng-Zhang
Jia, Chen-Yang
Su, Sun-Wen
Hao, Ge-Fei
Yang, Guang-Fu
author_sort Wang, Fan
collection PubMed
description Drug repurposing offers a promising alternative to dramatically shorten the process of traditional de novo development of a drug. These efforts leverage the fact that a single molecule can act on multiple targets and could be beneficial to indications where the additional targets are relevant. Hence, extensive research efforts have been directed toward developing drug based computational approaches. However, many drug based approaches are known to incur low successful rates, due to incomplete modeling of drug-target interactions. There are also many technical limitations to transform theoretical computational models into practical use. Drug based approaches may, thus, still face challenges for drug repurposing task. Upon this challenge, we developed a consensus inverse docking (CID) workflow, which has a ~ 10% enhancement in success rate compared with current best method. Besides, an easily accessible web server named auto in silico consensus inverse docking (ACID) was designed based on this workflow (http://chemyang.ccnu.edu.cn/ccb/server/ACID).
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spelling pubmed-68821932019-12-03 ACID: a free tool for drug repurposing using consensus inverse docking strategy Wang, Fan Wu, Feng-Xu Li, Cheng-Zhang Jia, Chen-Yang Su, Sun-Wen Hao, Ge-Fei Yang, Guang-Fu J Cheminform Research Article Drug repurposing offers a promising alternative to dramatically shorten the process of traditional de novo development of a drug. These efforts leverage the fact that a single molecule can act on multiple targets and could be beneficial to indications where the additional targets are relevant. Hence, extensive research efforts have been directed toward developing drug based computational approaches. However, many drug based approaches are known to incur low successful rates, due to incomplete modeling of drug-target interactions. There are also many technical limitations to transform theoretical computational models into practical use. Drug based approaches may, thus, still face challenges for drug repurposing task. Upon this challenge, we developed a consensus inverse docking (CID) workflow, which has a ~ 10% enhancement in success rate compared with current best method. Besides, an easily accessible web server named auto in silico consensus inverse docking (ACID) was designed based on this workflow (http://chemyang.ccnu.edu.cn/ccb/server/ACID). Springer International Publishing 2019-11-27 /pmc/articles/PMC6882193/ /pubmed/33430982 http://dx.doi.org/10.1186/s13321-019-0394-z Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Wang, Fan
Wu, Feng-Xu
Li, Cheng-Zhang
Jia, Chen-Yang
Su, Sun-Wen
Hao, Ge-Fei
Yang, Guang-Fu
ACID: a free tool for drug repurposing using consensus inverse docking strategy
title ACID: a free tool for drug repurposing using consensus inverse docking strategy
title_full ACID: a free tool for drug repurposing using consensus inverse docking strategy
title_fullStr ACID: a free tool for drug repurposing using consensus inverse docking strategy
title_full_unstemmed ACID: a free tool for drug repurposing using consensus inverse docking strategy
title_short ACID: a free tool for drug repurposing using consensus inverse docking strategy
title_sort acid: a free tool for drug repurposing using consensus inverse docking strategy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882193/
https://www.ncbi.nlm.nih.gov/pubmed/33430982
http://dx.doi.org/10.1186/s13321-019-0394-z
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