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Effects of Selective Exclusion of Patients on Preterm Birth Test Performance

The need to reduce the rate of preterm delivery and the recent emergence of technologies that measure hundreds of biological analytes (eg, genomics, transcriptomics, metabolomics, proteomics; collectively referred to as “omics approaches”) have led to proliferation of potential diagnostic biomarkers...

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Autores principales: Boniface, J. Jay, Burchard, Julja, Saade, George R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882533/
https://www.ncbi.nlm.nih.gov/pubmed/31764747
http://dx.doi.org/10.1097/AOG.0000000000003511
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author Boniface, J. Jay
Burchard, Julja
Saade, George R.
author_facet Boniface, J. Jay
Burchard, Julja
Saade, George R.
author_sort Boniface, J. Jay
collection PubMed
description The need to reduce the rate of preterm delivery and the recent emergence of technologies that measure hundreds of biological analytes (eg, genomics, transcriptomics, metabolomics, proteomics; collectively referred to as “omics approaches”) have led to proliferation of potential diagnostic biomarkers. On review of the literature, a concern must be raised regarding experimental design and data analysis reporting. Specifically, inaccurate performance has often been reported after selective exclusion of patients around the definition boundary of preterm birth. For example, authors may report the performance of a preterm delivery predictor by using patients who delivered early preterm compared with deliveries at 37 weeks of gestation or greater. A key principle that must be maintained during the development of any predictive test is to communicate performance for all patients for whom the test will be applicable clinically (ie, the intended-use population), which for prediction of preterm birth includes patients delivering throughout the spectrum of gestational ages, as this is what is to be predicted, and not known at the time of testing. Using biomarker data collected from the U.S.-based Proteomic Assessment of Preterm Risk clinical trial, we provide examples where the area under the receiver operating characteristic curve for the same test artifactually improves from 0.68 (for preterm delivery at less than 37 weeks of gestation) or 0.76 (for preterm delivery at less than 32 weeks of gestation) to 0.91 when patients who deliver late preterm are excluded. We review this phenomenon in this commentary and offer recommendations for clinicians and investigators going forward. FUNDING SOURCE: Sera Prognostics.
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spelling pubmed-68825332020-01-22 Effects of Selective Exclusion of Patients on Preterm Birth Test Performance Boniface, J. Jay Burchard, Julja Saade, George R. Obstet Gynecol Contents The need to reduce the rate of preterm delivery and the recent emergence of technologies that measure hundreds of biological analytes (eg, genomics, transcriptomics, metabolomics, proteomics; collectively referred to as “omics approaches”) have led to proliferation of potential diagnostic biomarkers. On review of the literature, a concern must be raised regarding experimental design and data analysis reporting. Specifically, inaccurate performance has often been reported after selective exclusion of patients around the definition boundary of preterm birth. For example, authors may report the performance of a preterm delivery predictor by using patients who delivered early preterm compared with deliveries at 37 weeks of gestation or greater. A key principle that must be maintained during the development of any predictive test is to communicate performance for all patients for whom the test will be applicable clinically (ie, the intended-use population), which for prediction of preterm birth includes patients delivering throughout the spectrum of gestational ages, as this is what is to be predicted, and not known at the time of testing. Using biomarker data collected from the U.S.-based Proteomic Assessment of Preterm Risk clinical trial, we provide examples where the area under the receiver operating characteristic curve for the same test artifactually improves from 0.68 (for preterm delivery at less than 37 weeks of gestation) or 0.76 (for preterm delivery at less than 32 weeks of gestation) to 0.91 when patients who deliver late preterm are excluded. We review this phenomenon in this commentary and offer recommendations for clinicians and investigators going forward. FUNDING SOURCE: Sera Prognostics. Lippincott Williams & Wilkins 2019-12 2019-11-06 /pmc/articles/PMC6882533/ /pubmed/31764747 http://dx.doi.org/10.1097/AOG.0000000000003511 Text en © 2019 The Author(s). Published by Wolters Kluwer Health, Inc. This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (http://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.
spellingShingle Contents
Boniface, J. Jay
Burchard, Julja
Saade, George R.
Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title_full Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title_fullStr Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title_full_unstemmed Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title_short Effects of Selective Exclusion of Patients on Preterm Birth Test Performance
title_sort effects of selective exclusion of patients on preterm birth test performance
topic Contents
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882533/
https://www.ncbi.nlm.nih.gov/pubmed/31764747
http://dx.doi.org/10.1097/AOG.0000000000003511
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