Cargando…
Tumor diversity and the trade-off between universal cancer tasks
Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory,...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882839/ https://www.ncbi.nlm.nih.gov/pubmed/31780652 http://dx.doi.org/10.1038/s41467-019-13195-1 |
_version_ | 1783474249369911296 |
---|---|
author | Hausser, Jean Szekely, Pablo Bar, Noam Zimmer, Anat Sheftel, Hila Caldas, Carlos Alon, Uri |
author_facet | Hausser, Jean Szekely, Pablo Bar, Noam Zimmer, Anat Sheftel, Hila Caldas, Carlos Alon, Uri |
author_sort | Hausser, Jean |
collection | PubMed |
description | Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory, using the fact that tumors need to perform multiple tasks that contribute to their fitness. We find that trade-offs between tasks constrain tumor gene-expression to a continuum bounded by a polyhedron whose vertices are gene-expression profiles, each specializing in one task. We find five universal cancer tasks across tissue-types: cell-division, biomass and energy, lipogenesis, immune-interaction and invasion and tissue-remodeling. Tumors that specialize in a task are sensitive to drugs that interfere with this task. Driver, but not passenger, mutations tune gene-expression towards specialization in specific tasks. This approach can integrate additional types of molecular data into a framework of tumor diversity grounded in evolutionary theory. |
format | Online Article Text |
id | pubmed-6882839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68828392019-12-03 Tumor diversity and the trade-off between universal cancer tasks Hausser, Jean Szekely, Pablo Bar, Noam Zimmer, Anat Sheftel, Hila Caldas, Carlos Alon, Uri Nat Commun Article Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory, using the fact that tumors need to perform multiple tasks that contribute to their fitness. We find that trade-offs between tasks constrain tumor gene-expression to a continuum bounded by a polyhedron whose vertices are gene-expression profiles, each specializing in one task. We find five universal cancer tasks across tissue-types: cell-division, biomass and energy, lipogenesis, immune-interaction and invasion and tissue-remodeling. Tumors that specialize in a task are sensitive to drugs that interfere with this task. Driver, but not passenger, mutations tune gene-expression towards specialization in specific tasks. This approach can integrate additional types of molecular data into a framework of tumor diversity grounded in evolutionary theory. Nature Publishing Group UK 2019-11-28 /pmc/articles/PMC6882839/ /pubmed/31780652 http://dx.doi.org/10.1038/s41467-019-13195-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Hausser, Jean Szekely, Pablo Bar, Noam Zimmer, Anat Sheftel, Hila Caldas, Carlos Alon, Uri Tumor diversity and the trade-off between universal cancer tasks |
title | Tumor diversity and the trade-off between universal cancer tasks |
title_full | Tumor diversity and the trade-off between universal cancer tasks |
title_fullStr | Tumor diversity and the trade-off between universal cancer tasks |
title_full_unstemmed | Tumor diversity and the trade-off between universal cancer tasks |
title_short | Tumor diversity and the trade-off between universal cancer tasks |
title_sort | tumor diversity and the trade-off between universal cancer tasks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882839/ https://www.ncbi.nlm.nih.gov/pubmed/31780652 http://dx.doi.org/10.1038/s41467-019-13195-1 |
work_keys_str_mv | AT hausserjean tumordiversityandthetradeoffbetweenuniversalcancertasks AT szekelypablo tumordiversityandthetradeoffbetweenuniversalcancertasks AT barnoam tumordiversityandthetradeoffbetweenuniversalcancertasks AT zimmeranat tumordiversityandthetradeoffbetweenuniversalcancertasks AT sheftelhila tumordiversityandthetradeoffbetweenuniversalcancertasks AT caldascarlos tumordiversityandthetradeoffbetweenuniversalcancertasks AT alonuri tumordiversityandthetradeoffbetweenuniversalcancertasks |