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Tumor diversity and the trade-off between universal cancer tasks

Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory,...

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Autores principales: Hausser, Jean, Szekely, Pablo, Bar, Noam, Zimmer, Anat, Sheftel, Hila, Caldas, Carlos, Alon, Uri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882839/
https://www.ncbi.nlm.nih.gov/pubmed/31780652
http://dx.doi.org/10.1038/s41467-019-13195-1
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author Hausser, Jean
Szekely, Pablo
Bar, Noam
Zimmer, Anat
Sheftel, Hila
Caldas, Carlos
Alon, Uri
author_facet Hausser, Jean
Szekely, Pablo
Bar, Noam
Zimmer, Anat
Sheftel, Hila
Caldas, Carlos
Alon, Uri
author_sort Hausser, Jean
collection PubMed
description Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory, using the fact that tumors need to perform multiple tasks that contribute to their fitness. We find that trade-offs between tasks constrain tumor gene-expression to a continuum bounded by a polyhedron whose vertices are gene-expression profiles, each specializing in one task. We find five universal cancer tasks across tissue-types: cell-division, biomass and energy, lipogenesis, immune-interaction and invasion and tissue-remodeling. Tumors that specialize in a task are sensitive to drugs that interfere with this task. Driver, but not passenger, mutations tune gene-expression towards specialization in specific tasks. This approach can integrate additional types of molecular data into a framework of tumor diversity grounded in evolutionary theory.
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spelling pubmed-68828392019-12-03 Tumor diversity and the trade-off between universal cancer tasks Hausser, Jean Szekely, Pablo Bar, Noam Zimmer, Anat Sheftel, Hila Caldas, Carlos Alon, Uri Nat Commun Article Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory, using the fact that tumors need to perform multiple tasks that contribute to their fitness. We find that trade-offs between tasks constrain tumor gene-expression to a continuum bounded by a polyhedron whose vertices are gene-expression profiles, each specializing in one task. We find five universal cancer tasks across tissue-types: cell-division, biomass and energy, lipogenesis, immune-interaction and invasion and tissue-remodeling. Tumors that specialize in a task are sensitive to drugs that interfere with this task. Driver, but not passenger, mutations tune gene-expression towards specialization in specific tasks. This approach can integrate additional types of molecular data into a framework of tumor diversity grounded in evolutionary theory. Nature Publishing Group UK 2019-11-28 /pmc/articles/PMC6882839/ /pubmed/31780652 http://dx.doi.org/10.1038/s41467-019-13195-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Hausser, Jean
Szekely, Pablo
Bar, Noam
Zimmer, Anat
Sheftel, Hila
Caldas, Carlos
Alon, Uri
Tumor diversity and the trade-off between universal cancer tasks
title Tumor diversity and the trade-off between universal cancer tasks
title_full Tumor diversity and the trade-off between universal cancer tasks
title_fullStr Tumor diversity and the trade-off between universal cancer tasks
title_full_unstemmed Tumor diversity and the trade-off between universal cancer tasks
title_short Tumor diversity and the trade-off between universal cancer tasks
title_sort tumor diversity and the trade-off between universal cancer tasks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882839/
https://www.ncbi.nlm.nih.gov/pubmed/31780652
http://dx.doi.org/10.1038/s41467-019-13195-1
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