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A downsampling strategy to assess the predictive value of radiomic features

Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer t...

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Autores principales: Dirand, Anne-Sophie, Frouin, Frédérique, Buvat, Irène
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883070/
https://www.ncbi.nlm.nih.gov/pubmed/31780708
http://dx.doi.org/10.1038/s41598-019-54190-2
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author Dirand, Anne-Sophie
Frouin, Frédérique
Buvat, Irène
author_facet Dirand, Anne-Sophie
Frouin, Frédérique
Buvat, Irène
author_sort Dirand, Anne-Sophie
collection PubMed
description Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer that question when considering a classification task into two groups. Using two large patient cohorts, several experimental configurations involving different numbers of patients were created. Univariate or multivariate radiomic models were designed from each configuration. Their performance as reflected by the Youden index (YI) and Area Under the receiver operating characteristic Curve (AUC) was compared to the stable performance obtained with the highest number of patients. A downsampling method is described to predict the YI and AUC achievable with a large number of patients. Using the multivariate models involving machine learning, YI and AUC increased with the number of patients while they decreased for univariate models. The downsampling method better estimated YI and AUC obtained with the largest number of patients than the YI and AUC obtained using the number of available patients and identifies the lack of information relevant to the classification task when no such information exists.
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spelling pubmed-68830702019-12-31 A downsampling strategy to assess the predictive value of radiomic features Dirand, Anne-Sophie Frouin, Frédérique Buvat, Irène Sci Rep Article Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer that question when considering a classification task into two groups. Using two large patient cohorts, several experimental configurations involving different numbers of patients were created. Univariate or multivariate radiomic models were designed from each configuration. Their performance as reflected by the Youden index (YI) and Area Under the receiver operating characteristic Curve (AUC) was compared to the stable performance obtained with the highest number of patients. A downsampling method is described to predict the YI and AUC achievable with a large number of patients. Using the multivariate models involving machine learning, YI and AUC increased with the number of patients while they decreased for univariate models. The downsampling method better estimated YI and AUC obtained with the largest number of patients than the YI and AUC obtained using the number of available patients and identifies the lack of information relevant to the classification task when no such information exists. Nature Publishing Group UK 2019-11-28 /pmc/articles/PMC6883070/ /pubmed/31780708 http://dx.doi.org/10.1038/s41598-019-54190-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Dirand, Anne-Sophie
Frouin, Frédérique
Buvat, Irène
A downsampling strategy to assess the predictive value of radiomic features
title A downsampling strategy to assess the predictive value of radiomic features
title_full A downsampling strategy to assess the predictive value of radiomic features
title_fullStr A downsampling strategy to assess the predictive value of radiomic features
title_full_unstemmed A downsampling strategy to assess the predictive value of radiomic features
title_short A downsampling strategy to assess the predictive value of radiomic features
title_sort downsampling strategy to assess the predictive value of radiomic features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883070/
https://www.ncbi.nlm.nih.gov/pubmed/31780708
http://dx.doi.org/10.1038/s41598-019-54190-2
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