Cargando…
A downsampling strategy to assess the predictive value of radiomic features
Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer t...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883070/ https://www.ncbi.nlm.nih.gov/pubmed/31780708 http://dx.doi.org/10.1038/s41598-019-54190-2 |
_version_ | 1783474295873208320 |
---|---|
author | Dirand, Anne-Sophie Frouin, Frédérique Buvat, Irène |
author_facet | Dirand, Anne-Sophie Frouin, Frédérique Buvat, Irène |
author_sort | Dirand, Anne-Sophie |
collection | PubMed |
description | Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer that question when considering a classification task into two groups. Using two large patient cohorts, several experimental configurations involving different numbers of patients were created. Univariate or multivariate radiomic models were designed from each configuration. Their performance as reflected by the Youden index (YI) and Area Under the receiver operating characteristic Curve (AUC) was compared to the stable performance obtained with the highest number of patients. A downsampling method is described to predict the YI and AUC achievable with a large number of patients. Using the multivariate models involving machine learning, YI and AUC increased with the number of patients while they decreased for univariate models. The downsampling method better estimated YI and AUC obtained with the largest number of patients than the YI and AUC obtained using the number of available patients and identifies the lack of information relevant to the classification task when no such information exists. |
format | Online Article Text |
id | pubmed-6883070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68830702019-12-31 A downsampling strategy to assess the predictive value of radiomic features Dirand, Anne-Sophie Frouin, Frédérique Buvat, Irène Sci Rep Article Many studies are devoted to the design of radiomic models for a prediction task. When no effective model is found, it is often difficult to know whether the radiomic features do not include information relevant to the task or because of insufficient data. We propose a downsampling method to answer that question when considering a classification task into two groups. Using two large patient cohorts, several experimental configurations involving different numbers of patients were created. Univariate or multivariate radiomic models were designed from each configuration. Their performance as reflected by the Youden index (YI) and Area Under the receiver operating characteristic Curve (AUC) was compared to the stable performance obtained with the highest number of patients. A downsampling method is described to predict the YI and AUC achievable with a large number of patients. Using the multivariate models involving machine learning, YI and AUC increased with the number of patients while they decreased for univariate models. The downsampling method better estimated YI and AUC obtained with the largest number of patients than the YI and AUC obtained using the number of available patients and identifies the lack of information relevant to the classification task when no such information exists. Nature Publishing Group UK 2019-11-28 /pmc/articles/PMC6883070/ /pubmed/31780708 http://dx.doi.org/10.1038/s41598-019-54190-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Dirand, Anne-Sophie Frouin, Frédérique Buvat, Irène A downsampling strategy to assess the predictive value of radiomic features |
title | A downsampling strategy to assess the predictive value of radiomic features |
title_full | A downsampling strategy to assess the predictive value of radiomic features |
title_fullStr | A downsampling strategy to assess the predictive value of radiomic features |
title_full_unstemmed | A downsampling strategy to assess the predictive value of radiomic features |
title_short | A downsampling strategy to assess the predictive value of radiomic features |
title_sort | downsampling strategy to assess the predictive value of radiomic features |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883070/ https://www.ncbi.nlm.nih.gov/pubmed/31780708 http://dx.doi.org/10.1038/s41598-019-54190-2 |
work_keys_str_mv | AT dirandannesophie adownsamplingstrategytoassessthepredictivevalueofradiomicfeatures AT frouinfrederique adownsamplingstrategytoassessthepredictivevalueofradiomicfeatures AT buvatirene adownsamplingstrategytoassessthepredictivevalueofradiomicfeatures AT dirandannesophie downsamplingstrategytoassessthepredictivevalueofradiomicfeatures AT frouinfrederique downsamplingstrategytoassessthepredictivevalueofradiomicfeatures AT buvatirene downsamplingstrategytoassessthepredictivevalueofradiomicfeatures |