Cargando…

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi

Anaerobic fungi (Neocallimastigomycota) are emerging non-model hosts for biotechnology due to their wealth of biomass-degrading enzymes, yet tools to engineer these fungi have not yet been established. Here, we show that the anaerobic gut fungi have the most GC depleted genomes among 443 sequenced o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wilken, St. Elmo, Seppälä, Susanna, Lankiewicz, Thomas S., Saxena, Mohan, Henske, John K., Salamov, Asaf A., Grigoriev, Igor V., O’Malley, Michelle A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883316/ https://www.ncbi.nlm.nih.gov/pubmed/31799118 http://dx.doi.org/10.1016/j.mec.2019.e00107

Ejemplares similares

Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
por: Seppälä, Susanna, et al.
Publicado: (2016)

A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction
por: Swift, Candice L., et al.
Publicado: (2021)

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
por: Peng, Xuefeng, et al.
Publicado: (2021)

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
por: Wilken, St. Elmo, et al.
Publicado: (2021)

Anaerobic gut fungi are an untapped reservoir of natural products
por: Swift, Candice L., et al.
Publicado: (2021)

Heterologous transporters from anaerobic fungi bolster fluoride tolerance in Saccharomyces cerevisiae
por: Seppälä, Susanna, et al.
Publicado: (2019)

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
por: Brown, Jennifer L., et al.
Publicado: (2021)

Identification and expression of small multidrug resistance transporters in early‐branching anaerobic fungi
por: Seppälä, Susanna, et al.
Publicado: (2023)

Lignin deconstruction by anaerobic fungi
por: Lankiewicz, Thomas S., et al.
Publicado: (2023)

Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture
por: Leggieri, Patrick A., et al.
Publicado: (2021)

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
por: Hagen, Live H., et al.
Publicado: (2020)

High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
por: Brown, Jennifer L., et al.
Publicado: (2023)

Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
por: Swift, Candice L., et al.
Publicado: (2021)

Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose
por: Brown, Jennifer L, et al.
Publicado: (2022)

The Anaerobic Fungi: Challenges and Opportunities for Industrial Lignocellulosic Biofuel Production
por: Saye, Luke M. G., et al.
Publicado: (2021)

Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution
por: Wint, Rhondene, et al.
Publicado: (2022)

PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
por: Edwards, Joan E., et al.
Publicado: (2017)

Driving biomass breakdown through engineered cellulosomes
por: Gilmore, Sean P, et al.
Publicado: (2015)

Cellulosome Localization Patterns Vary across Life Stages of Anaerobic Fungi
por: Lillington, Stephen P., et al.
Publicado: (2021)

An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi
por: Hage, Hayat, et al.
Publicado: (2023)

Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
por: Chang, Ying, et al.
Publicado: (2021)

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
por: Gordon, Sean P., et al.
Publicado: (2015)

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
por: Tabima, Javier F., et al.
Publicado: (2020)

Anaerobic fungi: Neocallimastigomycota
por: Griffith, Gareth W, et al.
Publicado: (2010)

Engineered fluoride sensitivity enables biocontainment and selection of genetically-modified yeasts
por: Yoo, Justin I., et al.
Publicado: (2020)

Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus
por: Henske, John K., et al.
Publicado: (2017)

Anaerobic Fungi: Past, Present, and Future
por: Hess, Matthias, et al.
Publicado: (2020)

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
por: Chang, Ying, et al.
Publicado: (2015)

Cellular proteome, coregulators, endocrine system and the human brain: the Regulatory biology of humanism
por: O'Malley, Bert W.
Publicado: (2011)

Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors
por: Wang, Yan, et al.
Publicado: (2023)

Nucleotide and protein researches on anaerobic fungi during four decades
por: Chang, Jongsoo, et al.
Publicado: (2020)

The Present Role and New Potentials of Anaerobic Fungi in Ruminant Nutrition
por: Hartinger, Thomas, et al.
Publicado: (2021)

No time to die: Comparative study on preservation protocols for anaerobic fungi
por: Vinzelj, Julia, et al.
Publicado: (2022)

Editorial for Special Issue “Unleashing the Hidden Potential of Anaerobic Fungi”
por: Lebuhn, Michael, et al.
Publicado: (2023)

Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1
por: Firrincieli, Andrea, et al.
Publicado: (2015)

Structure and enzymatic characterization of CelD endoglucanase from the anaerobic fungus Piromyces finnis
por: Dementiev, Alexey, et al.
Publicado: (2023)

Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China
por: Wang, Xuewei, et al.
Publicado: (2016)

Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures
por: Drake, Henrik, et al.
Publicado: (2017)

PhycoCosm, a comparative algal genomics resource
por: Grigoriev, Igor V, et al.
Publicado: (2020)

Proteomics of Plant Pathogenic Fungi
por: González-Fernández, Raquel, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_t9u7rogn77hc705v5f0beicvpb