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Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae)
Sand fly identification is complex because it depends on the expertise of the taxonomist. The females show subtle morphological differences and the occurrence of the species complexes are usual in this taxon. Therefore, a fragment of the cytochrome c oxidase subunit I (COI) gene is used for taxon ba...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Instituto Oswaldo Cruz, Ministério da Saúde
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884398/ https://www.ncbi.nlm.nih.gov/pubmed/31800740 http://dx.doi.org/10.1590/0074-02760190208 |
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author | Laurito, Magdalena Ontivero, Iliana M Almirón, Walter R |
author_facet | Laurito, Magdalena Ontivero, Iliana M Almirón, Walter R |
author_sort | Laurito, Magdalena |
collection | PubMed |
description | Sand fly identification is complex because it depends on the expertise of the taxonomist. The females show subtle morphological differences and the occurrence of the species complexes are usual in this taxon. Therefore, a fragment of the cytochrome c oxidase subunit I (COI) gene is used for taxon barcoding to resolve this kind of problem. This study incorporates barcode sequences, for the first time, for Evandromyia cortelezzii and Migonemyia migonei from Argentina. The nucleotide sequence divergences were estimated to generate a neighbour-joining (NJ) tree. The automatic barcode gap discovery (ABGD) approach was employed to find the barcode gaps and the operational taxonomic unit (OTU) delimitation. Other species of the subtribe were included. The frequency histogram of divergences showed a barcoding gap. The ABGD analysis identified 14 operational taxonomic units (OTUs) from 13 morphological species. Sequences of Ev. cortelezzii and Mg. migonei formed well supported clusters and were diagnosed as primary species. These sequences are useful tools for molecular identification of the sand flies of the New World. |
format | Online Article Text |
id | pubmed-6884398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Instituto Oswaldo Cruz, Ministério da Saúde |
record_format | MEDLINE/PubMed |
spelling | pubmed-68843982019-12-09 Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) Laurito, Magdalena Ontivero, Iliana M Almirón, Walter R Mem Inst Oswaldo Cruz Short Communication Sand fly identification is complex because it depends on the expertise of the taxonomist. The females show subtle morphological differences and the occurrence of the species complexes are usual in this taxon. Therefore, a fragment of the cytochrome c oxidase subunit I (COI) gene is used for taxon barcoding to resolve this kind of problem. This study incorporates barcode sequences, for the first time, for Evandromyia cortelezzii and Migonemyia migonei from Argentina. The nucleotide sequence divergences were estimated to generate a neighbour-joining (NJ) tree. The automatic barcode gap discovery (ABGD) approach was employed to find the barcode gaps and the operational taxonomic unit (OTU) delimitation. Other species of the subtribe were included. The frequency histogram of divergences showed a barcoding gap. The ABGD analysis identified 14 operational taxonomic units (OTUs) from 13 morphological species. Sequences of Ev. cortelezzii and Mg. migonei formed well supported clusters and were diagnosed as primary species. These sequences are useful tools for molecular identification of the sand flies of the New World. Instituto Oswaldo Cruz, Ministério da Saúde 2019-11-28 /pmc/articles/PMC6884398/ /pubmed/31800740 http://dx.doi.org/10.1590/0074-02760190208 Text en https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License |
spellingShingle | Short Communication Laurito, Magdalena Ontivero, Iliana M Almirón, Walter R Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title | Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title_full | Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title_fullStr | Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title_full_unstemmed | Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title_short | Increasing the digital repository of DNA barcoding sequences of sand flies (Psychodidae: Phlebotominae) |
title_sort | increasing the digital repository of dna barcoding sequences of sand flies (psychodidae: phlebotominae) |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884398/ https://www.ncbi.nlm.nih.gov/pubmed/31800740 http://dx.doi.org/10.1590/0074-02760190208 |
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