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Enzyme-mimetic self-catalyzed polymerization of polypeptide helices

Enzymes provide optimal three-dimensional structures for substrate binding and the subsequent accelerated reaction. Such folding-dependent catalytic behaviors, however, are seldom mechanistically explored with reduced structural complexity. Here, we demonstrate that the α-helix, a much simpler struc...

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Autores principales: Song, Ziyuan, Fu, Hailin, Baumgartner, Ryan, Zhu, Lingyang, Shih, Kuo-Chih, Xia, Yingchun, Zheng, Xuetao, Yin, Lichen, Chipot, Christophe, Lin, Yao, Cheng, Jianjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884638/
https://www.ncbi.nlm.nih.gov/pubmed/31784526
http://dx.doi.org/10.1038/s41467-019-13502-w
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author Song, Ziyuan
Fu, Hailin
Baumgartner, Ryan
Zhu, Lingyang
Shih, Kuo-Chih
Xia, Yingchun
Zheng, Xuetao
Yin, Lichen
Chipot, Christophe
Lin, Yao
Cheng, Jianjun
author_facet Song, Ziyuan
Fu, Hailin
Baumgartner, Ryan
Zhu, Lingyang
Shih, Kuo-Chih
Xia, Yingchun
Zheng, Xuetao
Yin, Lichen
Chipot, Christophe
Lin, Yao
Cheng, Jianjun
author_sort Song, Ziyuan
collection PubMed
description Enzymes provide optimal three-dimensional structures for substrate binding and the subsequent accelerated reaction. Such folding-dependent catalytic behaviors, however, are seldom mechanistically explored with reduced structural complexity. Here, we demonstrate that the α-helix, a much simpler structural motif of enzyme, can facilitate its own growth through the self-catalyzed polymerization of N-carboxyanhydride (NCA) in dichloromethane. The reversible binding between the N terminus of α-helical polypeptides and NCAs promotes rate acceleration of the subsequent ring-opening reaction. A two-stage, Michaelis–Menten-type kinetic model is proposed by considering the binding and reaction between the propagating helical chains and the monomers, and is successfully utilized to predict the molecular weights and molecular-weight distributions of the resulting polymers. This work elucidates the mechanism of helix-induced, enzyme-mimetic catalysis, emphasizes the importance of solvent choice in the discovery of new reaction type, and provides a route for rapid production of well-defined synthetic polypeptides by taking advantage of self-accelerated ring-opening polymerizations.
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spelling pubmed-68846382019-12-03 Enzyme-mimetic self-catalyzed polymerization of polypeptide helices Song, Ziyuan Fu, Hailin Baumgartner, Ryan Zhu, Lingyang Shih, Kuo-Chih Xia, Yingchun Zheng, Xuetao Yin, Lichen Chipot, Christophe Lin, Yao Cheng, Jianjun Nat Commun Article Enzymes provide optimal three-dimensional structures for substrate binding and the subsequent accelerated reaction. Such folding-dependent catalytic behaviors, however, are seldom mechanistically explored with reduced structural complexity. Here, we demonstrate that the α-helix, a much simpler structural motif of enzyme, can facilitate its own growth through the self-catalyzed polymerization of N-carboxyanhydride (NCA) in dichloromethane. The reversible binding between the N terminus of α-helical polypeptides and NCAs promotes rate acceleration of the subsequent ring-opening reaction. A two-stage, Michaelis–Menten-type kinetic model is proposed by considering the binding and reaction between the propagating helical chains and the monomers, and is successfully utilized to predict the molecular weights and molecular-weight distributions of the resulting polymers. This work elucidates the mechanism of helix-induced, enzyme-mimetic catalysis, emphasizes the importance of solvent choice in the discovery of new reaction type, and provides a route for rapid production of well-defined synthetic polypeptides by taking advantage of self-accelerated ring-opening polymerizations. Nature Publishing Group UK 2019-11-29 /pmc/articles/PMC6884638/ /pubmed/31784526 http://dx.doi.org/10.1038/s41467-019-13502-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Song, Ziyuan
Fu, Hailin
Baumgartner, Ryan
Zhu, Lingyang
Shih, Kuo-Chih
Xia, Yingchun
Zheng, Xuetao
Yin, Lichen
Chipot, Christophe
Lin, Yao
Cheng, Jianjun
Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title_full Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title_fullStr Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title_full_unstemmed Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title_short Enzyme-mimetic self-catalyzed polymerization of polypeptide helices
title_sort enzyme-mimetic self-catalyzed polymerization of polypeptide helices
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884638/
https://www.ncbi.nlm.nih.gov/pubmed/31784526
http://dx.doi.org/10.1038/s41467-019-13502-w
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