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Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study

BACKGROUND & OBJECTIVES: ADAM33 is implicated as a potentially strong candidate gene for asthma and bronchial hyper-responsiveness. Many polymorphisms of ADAM33 have been studied along with ADAM33 expression in various cells of the lungs. Haplotype analysis also showed association with asthma in...

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Autores principales: Vishweswaraiah, Sangeetha, Ramachandra, Nallur B., Jayaraj, B.S., Holla, Amrutha D., Chakraborty, Samarpana, Agrawal, Anurag, Mahesh, Padukudru A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6886134/
https://www.ncbi.nlm.nih.gov/pubmed/31719298
http://dx.doi.org/10.4103/ijmr.IJMR_698_17
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author Vishweswaraiah, Sangeetha
Ramachandra, Nallur B.
Jayaraj, B.S.
Holla, Amrutha D.
Chakraborty, Samarpana
Agrawal, Anurag
Mahesh, Padukudru A.
author_facet Vishweswaraiah, Sangeetha
Ramachandra, Nallur B.
Jayaraj, B.S.
Holla, Amrutha D.
Chakraborty, Samarpana
Agrawal, Anurag
Mahesh, Padukudru A.
author_sort Vishweswaraiah, Sangeetha
collection PubMed
description BACKGROUND & OBJECTIVES: ADAM33 is implicated as a potentially strong candidate gene for asthma and bronchial hyper-responsiveness. Many polymorphisms of ADAM33 have been studied along with ADAM33 expression in various cells of the lungs. Haplotype analysis also showed association with asthma in different populations across the world. Therefore, the aim of this study was to perform a comprehensive screening of ADAM33 polymorphisms in adult patients with asthma. METHODS: Thirty five polymorphisms of ADAM33 were genotyped in 55 patients with asthma and 53 controls. The association of single nucleotide polymorphisms (SNPs) and haplotypes with phenotypes of asthma was analysed. RESULTS: The genotype, minor allele frequency, odds ratio and Hardy–Weinberg equilibrium did not show any significant difference among cases and controls. No association was found between SNPs of ADAM33 with the severity of asthma. Correlation analysis of ADAM33 SNPs to the phenotypes, based on clinical variables and allergen sensitization, did not show significant difference. Haplotype analysis showed that rs2280090 and rs2280091 were associated with asthma in the patient group. INTERPRETATION & CONCLUSIONS: Haplotype analysis showed an association of the two SNP variations with asthma. These SNPs lead to amino acid change and are prone to phosphorylation, which may affect expression levels and protein function of ADAM33 and asthma susceptibility.
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spelling pubmed-68861342019-12-09 Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study Vishweswaraiah, Sangeetha Ramachandra, Nallur B. Jayaraj, B.S. Holla, Amrutha D. Chakraborty, Samarpana Agrawal, Anurag Mahesh, Padukudru A. Indian J Med Res Original Article BACKGROUND & OBJECTIVES: ADAM33 is implicated as a potentially strong candidate gene for asthma and bronchial hyper-responsiveness. Many polymorphisms of ADAM33 have been studied along with ADAM33 expression in various cells of the lungs. Haplotype analysis also showed association with asthma in different populations across the world. Therefore, the aim of this study was to perform a comprehensive screening of ADAM33 polymorphisms in adult patients with asthma. METHODS: Thirty five polymorphisms of ADAM33 were genotyped in 55 patients with asthma and 53 controls. The association of single nucleotide polymorphisms (SNPs) and haplotypes with phenotypes of asthma was analysed. RESULTS: The genotype, minor allele frequency, odds ratio and Hardy–Weinberg equilibrium did not show any significant difference among cases and controls. No association was found between SNPs of ADAM33 with the severity of asthma. Correlation analysis of ADAM33 SNPs to the phenotypes, based on clinical variables and allergen sensitization, did not show significant difference. Haplotype analysis showed that rs2280090 and rs2280091 were associated with asthma in the patient group. INTERPRETATION & CONCLUSIONS: Haplotype analysis showed an association of the two SNP variations with asthma. These SNPs lead to amino acid change and are prone to phosphorylation, which may affect expression levels and protein function of ADAM33 and asthma susceptibility. Wolters Kluwer - Medknow 2019-09 /pmc/articles/PMC6886134/ /pubmed/31719298 http://dx.doi.org/10.4103/ijmr.IJMR_698_17 Text en Copyright: © 2019 Indian Journal of Medical Research http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Vishweswaraiah, Sangeetha
Ramachandra, Nallur B.
Jayaraj, B.S.
Holla, Amrutha D.
Chakraborty, Samarpana
Agrawal, Anurag
Mahesh, Padukudru A.
Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title_full Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title_fullStr Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title_full_unstemmed Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title_short Haplotype analysis of ADAM33 polymorphisms in asthma: A pilot study
title_sort haplotype analysis of adam33 polymorphisms in asthma: a pilot study
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6886134/
https://www.ncbi.nlm.nih.gov/pubmed/31719298
http://dx.doi.org/10.4103/ijmr.IJMR_698_17
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