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Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer
Alternative splicing (AS), an important post-transcriptional regulatory mechanism that regulates the translation of mRNA isoforms and generates protein diversity, has been widely demonstrated to be associated with oncogenic processes. In this study, we systematically analyzed genome-wide AS patterns...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society of Gene & Cell Therapy
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889075/ https://www.ncbi.nlm.nih.gov/pubmed/31785579 http://dx.doi.org/10.1016/j.omtn.2019.10.027 |
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author | Wang, Qian Xu, Teng Tong, Yu Wu, Jianbo Zhu, Weijian Lu, Zhongqiu Ying, Jianchao |
author_facet | Wang, Qian Xu, Teng Tong, Yu Wu, Jianbo Zhu, Weijian Lu, Zhongqiu Ying, Jianchao |
author_sort | Wang, Qian |
collection | PubMed |
description | Alternative splicing (AS), an important post-transcriptional regulatory mechanism that regulates the translation of mRNA isoforms and generates protein diversity, has been widely demonstrated to be associated with oncogenic processes. In this study, we systematically analyzed genome-wide AS patterns to explore the prognostic implications of AS in endometrial cancer (EC). A total of 2,324 AS events were identified as being associated with the overall survival of EC patients, and eleven of these events were further selected using a random forest algorithm. With the implementation of a generalized, boosted regression model, a prognostic AS model that aggregated these eleven markers was ultimately established with high performance for risk stratification in EC patients. Functional analysis of these eleven AS markers revealed various potential signaling pathways implicated in the progression of EC. Splicing network analysis demonstrated the notable correlation between the expression of splicing factors and AS markers in EC and further determined eight candidate splicing factors that could be therapeutic targets for EC. Taken together, the results of this study present the utility of AS profiling in identifying biomarkers for the prognosis of EC and provide comprehensive insight into the molecular mechanisms involved in EC processes. |
format | Online Article Text |
id | pubmed-6889075 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Society of Gene & Cell Therapy |
record_format | MEDLINE/PubMed |
spelling | pubmed-68890752019-12-11 Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer Wang, Qian Xu, Teng Tong, Yu Wu, Jianbo Zhu, Weijian Lu, Zhongqiu Ying, Jianchao Mol Ther Nucleic Acids Article Alternative splicing (AS), an important post-transcriptional regulatory mechanism that regulates the translation of mRNA isoforms and generates protein diversity, has been widely demonstrated to be associated with oncogenic processes. In this study, we systematically analyzed genome-wide AS patterns to explore the prognostic implications of AS in endometrial cancer (EC). A total of 2,324 AS events were identified as being associated with the overall survival of EC patients, and eleven of these events were further selected using a random forest algorithm. With the implementation of a generalized, boosted regression model, a prognostic AS model that aggregated these eleven markers was ultimately established with high performance for risk stratification in EC patients. Functional analysis of these eleven AS markers revealed various potential signaling pathways implicated in the progression of EC. Splicing network analysis demonstrated the notable correlation between the expression of splicing factors and AS markers in EC and further determined eight candidate splicing factors that could be therapeutic targets for EC. Taken together, the results of this study present the utility of AS profiling in identifying biomarkers for the prognosis of EC and provide comprehensive insight into the molecular mechanisms involved in EC processes. American Society of Gene & Cell Therapy 2019-11-02 /pmc/articles/PMC6889075/ /pubmed/31785579 http://dx.doi.org/10.1016/j.omtn.2019.10.027 Text en © 2019 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Wang, Qian Xu, Teng Tong, Yu Wu, Jianbo Zhu, Weijian Lu, Zhongqiu Ying, Jianchao Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title | Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title_full | Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title_fullStr | Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title_full_unstemmed | Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title_short | Prognostic Potential of Alternative Splicing Markers in Endometrial Cancer |
title_sort | prognostic potential of alternative splicing markers in endometrial cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889075/ https://www.ncbi.nlm.nih.gov/pubmed/31785579 http://dx.doi.org/10.1016/j.omtn.2019.10.027 |
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